Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G01
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    27   0.82 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   1.1  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   4.4  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   4.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   5.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   5.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   5.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   7.7  

>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 215 RRSRPEICPPFPIYHQPTLLVVVSNICSRTRSVHQRAPLTLISLPRMTIIWAAN 376
           +R+RP   PP    H P LL+    +       H     +L  LPR  I   AN
Sbjct: 60  KRARPSQKPPLRSTHLPHLLIFALFVGKHIACFHHLLLSSLPCLPRSEIYRLAN 113


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 121 SQTLIFLGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 273
           + TL   G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 259 TSTLTDAGFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 239 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 331
           P F      +     + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +1

Query: 145 IGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIGASAS 324
           I    ++ G   L  NN       AF + +  T +   S++++  GL+ + K        
Sbjct: 197 ISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMANGLQSISKHSAAFPLL 256

Query: 325 AAHTDFFTKN 354
           +  T FF +N
Sbjct: 257 SNATSFFGEN 266


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 209 PRRRSRPEICPPFPI 253
           PRRR RP   PP PI
Sbjct: 100 PRRRGRPRKYPPKPI 114


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/32 (21%), Positives = 20/32 (62%)
 Frame = +1

Query: 178 NLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 273
           ++ H + H L++ +F+T+ + T   + ++ T+
Sbjct: 431 SILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -2

Query: 295 TYIRDHHQQCWLMVNGKWWA 236
           TY+      CW  +   WWA
Sbjct: 756 TYVYSSTMLCWQRITEPWWA 775


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 251  IYHQPTLLVVVSNICSRTRSVHQ 319
            +YHQ TL  +   ICS+ ++V Q
Sbjct: 2124 LYHQLTLYQLQDLICSKCKTVKQ 2146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,474
Number of Sequences: 5004
Number of extensions: 37443
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)