Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_G01
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0129 + 18431820-18432224 31 0.26
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42... 29 1.4
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 28 3.2
02_02_0294 - 8651289-8651395,8651527-8651776 28 3.2
06_02_0163 - 12488622-12488717,12488744-12488844,12490765-12490924 27 5.6
10_08_0359 - 17167829-17169595,17169976-17169996 27 7.3
11_05_0059 - 18724619-18725053 26 9.7
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 26 9.7
10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335 26 9.7
10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317 26 9.7
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942... 26 9.7
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 26 9.7
07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893 26 9.7
07_01_1106 - 10187609-10190041,10190292-10191932 26 9.7
>01_05_0129 + 18431820-18432224
Length = 134
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 212 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 304
RRR RP PP P H P V+V+ +RT
Sbjct: 4 RRRQRPSSSPPLPPEHSPLPSVIVATARART 34
>01_01_0056 +
422141-422379,422524-422620,422697-422774,422871-422930,
423019-423123,423743-423856,424145-424186,424380-424496,
424568-424755,425502-425785,425869-425990,426118-426160,
426265-426356,427331-427379,427623-427693,427793-427912,
428586-428674,429266-429311,429926-429973
Length = 667
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 226 SRTPSRINHGRCYETGSLYQQQTI 155
SRTPS ++H +E+G QQTI
Sbjct: 16 SRTPSALHHNGAFESGEPSMQQTI 39
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 91 TIMSTATELPSQTLIFLGIGDKLSVAGKVNLFHNNDHDLSA 213
T+M TA +P L G+ + L + V LFH + D++A
Sbjct: 336 TVMPTAPVMPEVPLTVTGLLNSLGLEKYVFLFHAEEVDMAA 376
>02_02_0294 - 8651289-8651395,8651527-8651776
Length = 118
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 149 PIPRNMSVCEGSSVAVDIIVN*SSCSGP 66
P PR + EGS V V++ + CSGP
Sbjct: 72 PFPRPSTSAEGSDVGVEVSKATNHCSGP 99
>06_02_0163 - 12488622-12488717,12488744-12488844,12490765-12490924
Length = 118
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 373 CRPDYSHSW*RNQCERRSLMHRSCP*TYIRDHHQQC 266
C P +S N+C R S+ + P ++ D H QC
Sbjct: 6 CAPAIENS--PNKCNRGSIYQHAIPPWFLTDPHHQC 39
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 26.6 bits (56), Expect = 7.3
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Frame = -2
Query: 241 WAYFWSRTPSRINHGRCYETGSLYQQQTI----YLQFP--GI*VFVRVAPW 107
W YF TP G+CYE G + + ++ P G F + PW
Sbjct: 359 WGYFPDNTPEPHIPGKCYEGGIITSMHRVTERTIIETPALGPGAFAALVPW 409
>11_05_0059 - 18724619-18725053
Length = 144
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 264 QHCWWWSRIYVQGQDR 311
+HC WWSR +G DR
Sbjct: 27 RHCCWWSRGRSRGGDR 42
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 184 FHNNDHDLSAKAFATRNMPTISHLPSTNTVGGGLEYMFKDKIG 312
F NND + A N P ++ + N G +EY+F DK G
Sbjct: 375 FINNDLHMY---HAESNTPALARTSNLNEELGQVEYIFSDKTG 414
>10_07_0175 - 13817381-13817782,13817878-13818131,13818308-13818335
Length = 227
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 280 HHQQCWLMVNGKWWAYFWSR 221
HH++C +NGK+ F SR
Sbjct: 32 HHEECAKQINGKYHTNFTSR 51
>10_07_0167 + 13756200-13756227,13756401-13756561,13756754-13757317
Length = 250
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 280 HHQQCWLMVNGKWWAYFWSR 221
HH++C +NGK+ F SR
Sbjct: 33 HHEECAKQINGKYHTNFTSR 52
>09_04_0184 -
15393441-15393642,15393789-15393940,15394047-15394208,
15394372-15394585,15395017-15395297
Length = 336
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 260 DGKWEMVGIFLVANAFADKSWSLL 189
D W GI+L+ NAF W +L
Sbjct: 141 DDDWVKGGIYLIGNAFCVSIWYIL 164
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 280 HHQQCWLMVNGKWWAYFWSR 221
HH++C +NGK+ F SR
Sbjct: 564 HHEECAKQINGKYHTNFTSR 583
>07_03_1402 + 26302443-26302575,26302851-26302980,26303128-26303893
Length = 342
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 248 PIYHQPTLLVVVSNICSRTRSVHQRAPLTLISL 346
P H+P VV + C+RT +V A L L S+
Sbjct: 123 PATHKPLAEVVAAAACARTPAVFSDAELILSSI 155
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 26.2 bits (55), Expect = 9.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 247 KWWAYFWSRTPSRINHGRCYE 185
+WW Y W T + RC++
Sbjct: 533 RWWKYNWVHTQCNLKSYRCHQ 553
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,802
Number of Sequences: 37544
Number of extensions: 267827
Number of successful extensions: 654
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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