Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_G01
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AL021479-2|CAA16323.1|  298|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z68120-2|CAA92200.1|  218|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 238 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 342
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>AL021479-2|CAA16323.1|  298|Caenorhabditis elegans Hypothetical
           protein Y22F5A.4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 IGASASAAHTDFFTKNDYNLGGKLNLIQGL 396
           I A+AS+ +TDFFT+ D +   K  ++ G+
Sbjct: 266 IPAAASSKNTDFFTQEDISSNNKKIVVGGV 295


>Z68120-2|CAA92200.1|  218|Caenorhabditis elegans Hypothetical
           protein T24C2.2 protein.
          Length = 218

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 170 PATDNLSPIPRNMSVCEGSSVAVDIIVN 87
           PA + L    R  +VCEG  + VD++++
Sbjct: 116 PAEEKLRDQLRQKAVCEGKKIRVDLVMS 143


>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 CFITTTMIYPRRRSRPEICPPFPIYHQ 262
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 CFITTTMIYPRRRSRPEICPPFPIYHQ 262
           CF+  T  YPR++S  +I    P+YH+
Sbjct: 72  CFLKDTYFYPRQQSMTDI----PMYHK 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,512
Number of Sequences: 27780
Number of extensions: 215404
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)