Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F23
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    28   0.66 
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   0.87 
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   1.2  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    27   1.5  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   1.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   4.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.1  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   6.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    24   8.1  

>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 198 IKDLENGLAEASINRGGLGLDFVNIKL--KSERGSGFKYVVEIY 323
           IK L  G +   I +G    D ++I +  KSE  SGFK+ V++Y
Sbjct: 394 IKSLVEGNSAYEIEKGAQEPDPMSIDMTDKSETVSGFKHDVDVY 437


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 232 DASAKPFSKSLIAI--PLIFCSGCGNWK*TSSTRFIKGIADDS 110
           D  A PF K+L +   P    S  GN+K   +T F KG++ D+
Sbjct: 465 DKQASPFVKNLSSTSSPFSQSSAFGNFKFGQATSFDKGLSTDA 507


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 104 SFVHFPDDTTIIVCLTDN-HTFGL-HYGNN 21
           SF+H PD  T ++ L +N   FGL +YG N
Sbjct: 84  SFIHQPDSRTQVLALENNIKEFGLTYYGMN 113


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 113 LDDSFVHFPDDTTIIVCLTDNHTFGL 36
           L+ S VH+ DD+ + +C   N++F L
Sbjct: 265 LEQSIVHWQDDSVVQICPECNNSFTL 290


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 57  GQTYDYSGVVRKVYERVIESSAIPLIKRV 143
           G  ++   V+R V ++++   A+PL KR+
Sbjct: 291 GTRFEVQSVIRTVSDKILYDKAVPLEKRI 319


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +3

Query: 117 SAIPLIKRVEEVYFQFPQPEQKIKGIAIKDLE 212
           S++PL +RVEEV F    PE+ I+ +++  +E
Sbjct: 9   SSVPL-RRVEEVQFGILSPEE-IRSMSVAKIE 38


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 110 DDSFVHFPDDTTIIVCLTDNHT 45
           D S V  P+ T ++VC TD+ T
Sbjct: 248 DTSMVSSPNKTHVVVCSTDDLT 269


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 96  YERVIESSAIPLIKRVEEVYFQFPQPEQKIKGIAIKDL 209
           + RV +S++ PL   +  +Y+  PQP +K++ ++++ L
Sbjct: 109 HPRVFDSASTPLKINLHIIYYHPPQP-RKMQFLSLEPL 145


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 292 PLSLFSLMLTKSRPNPPRLID 230
           PLSL+ L +    PN P+L++
Sbjct: 208 PLSLYPLTVLTQNPNLPKLLE 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,811
Number of Sequences: 5004
Number of extensions: 31457
Number of successful extensions: 72
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)