Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F23
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    28   3.4  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    28   3.4  
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332...    27   4.5  
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894...    27   5.9  

>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 319 ISTTYLNPDPLSLFSLMLTKSRPNPPRLIDASA 221
           IS TY NP P+ +   ML K    PPR  D+ A
Sbjct: 620 ISNTYENPSPMIVDEAMLEKVL-GPPRFDDSEA 651


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 77  TIIVCLTDNHTFGLHYGNNAY**YK 3
           T+++CL D+HTF  H+  +    YK
Sbjct: 273 TLLLCLGDSHTFNTHFSQHMEILYK 297


>11_06_0148 +
           20631949-20632338,20632838-20633044,20633168-20633267,
           20633478-20633560,20633656-20633712,20633790-20633942,
           20634016-20634094,20634279-20634427,20634541-20634675,
           20634783-20634896,20635065-20635175,20635338-20635373,
           20635675-20635884
          Length = 607

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 69  DYSGVVRKVYERVIESSAIPLIKRVEEVYF 158
           D+ G+ RK YE+  E  A  +IKR+E+  F
Sbjct: 449 DWEGLSRKDYEKKKELVATEIIKRLEKKLF 478


>02_05_0402 +
           28687597-28687671,28688123-28688235,28688927-28689432,
           28689544-28689717,28689953-28690082,28692241-28692772,
           28693578-28693823,28694648-28695061
          Length = 729

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 24  IAVVQSKSVIVGQTYDYSGVVRKVYERVIESSAIPLIKRVEEV-YFQFPQPEQ 179
           +A  + K     QT+DY+ +V+K YE  +E  +  +++++ +  Y+ +  P Q
Sbjct: 117 VADAEQKDTSNQQTWDYNELVKKYYE--LEEQSRKVLEQLHQTNYWNYQVPGQ 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,960,890
Number of Sequences: 37544
Number of extensions: 190842
Number of successful extensions: 389
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)