Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_F23
(413 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.50
SB_30892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.87
SB_89| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.1
SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 27 4.6
SB_16696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43) 27 6.1
SB_55215| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0003) 27 8.1
>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 30.7 bits (66), Expect = 0.50
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 173 RTENQRYSDQRFREWLSGGIDQPRRIRSRLC*HQTEERKGIRVQ 304
RTE QR +Q+ REW + + R +R R+ + E K +++
Sbjct: 110 RTERQRMEEQKDREWKNRKTENGRTVRQRMEEQKDREWKDRKIE 153
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 173 RTENQRYSDQRFREWLSGGIDQPRRIRSRL 262
RTE QR Q+ REW I+ R R R+
Sbjct: 41 RTERQRMEGQKDREWKDSQIENGRTERQRM 70
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 173 RTENQRYSDQRFREWLSGGIDQPRRIRSRLC*HQTEERKGIRVQ 304
RTE QR +Q+ REW + R R R+ + E K +++
Sbjct: 18 RTERQRMEEQKDREWKERKTENGRTERQRMEGQKDREWKDSQIE 61
>SB_30892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 29.9 bits (64), Expect = 0.87
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 173 RTENQRYSDQRFREWLSGGIDQPRRIRSRL 262
RTE QR Q+ REW D R +R R+
Sbjct: 18 RTERQRMEGQKGREWKDRKTDNGRTVRQRM 47
>SB_89| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 89 ESVRTSHRVISYTFNKTCRRSLFPVPATRTENQRYSDQRFREWLSGGID 235
E + HR +S + C P+P + T R D R R+WL+ G D
Sbjct: 48 EREKRLHRCVS----RICDTGYIPLPRSLTRYARSFDCRERKWLTNGAD 92
>SB_59346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 32 SAIQKCDCRSDIRL*WCRQES 94
S ++ CRS +R+ WCR S
Sbjct: 201 STVRPASCRSSVRITWCRSSS 221
>SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 895
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 107 HRVISYTFNKTCRRSLFPVPATRTENQRYSDQRFREWLSGGIDQPRR 247
HR +S + C P+P + T R D R+WL+ G + P R
Sbjct: 848 HRCVS----RICDTGYIPLPRSLTRYARSFDCGERKWLTNGAEIPGR 890
>SB_16696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 107 HRVISYTFNKTCRRSLFPVPATRTENQRYSDQRFREWLSGGIDQPRR 247
HR +S + C P+P + T R D R+WL+ G + P R
Sbjct: 54 HRCVS----RICDTGYIPLPRSLTRYARSFDCGERKWLTNGAEIPGR 96
>SB_49173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 262 KSRPNPPRLIDASAKPFSKSLIAIPLIFCSGCG 164
K++PNP +D+S P+ + +A CS G
Sbjct: 35 KAKPNPIPPVDSSGGPYYRGAVAADAKNCSAIG 67
>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 262 KSRPNPPRLIDASAKPFSKSLIAIPLIFCSGCG 164
K++PNP +D+S P+ + +A CS G
Sbjct: 195 KAKPNPIPPVDSSGGPYYRGAVAADAKNCSAIG 227
>SB_42017| Best HMM Match : DUF1421 (HMM E-Value=0.43)
Length = 565
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 319 ISTTYLNPDPLSLFSLMLTKSRPNPPRLIDASAKP 215
I ++ P+PLS F+ M TKS+ + A P
Sbjct: 122 IKVNFIRPNPLSTFTAMRTKSKSFTAKATTPDALP 156
>SB_55215| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0003)
Length = 458
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +2
Query: 107 HRVISYTFNKTCRRSLFPVPATRTENQRYSDQRFREWLSGGIDQPRRIRSRLC*HQTEER 286
HR +S + C P+P + T R D R+WL+ G + ++ R +R
Sbjct: 54 HRCVS----RICDTGYIPLPRSLTRYARSFDCGERKWLTNGAEISWKMPGRYLTGNASKR 109
Query: 287 KGIRVQICSRNLC 325
K R ++ C
Sbjct: 110 KRKRKKVSKEIDC 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,180
Number of Sequences: 59808
Number of extensions: 237741
Number of successful extensions: 968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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