Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F22
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...   120   1e-28
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.1  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    26   5.4  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   7.2  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   7.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   7.2  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   9.5  

>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score =  120 bits (290), Expect = 1e-28
 Identities = 67/179 (37%), Positives = 105/179 (58%)
 Frame = +2

Query: 2   DILTYVTWKISGLPKHRVIGSGTNLDSARFRYLLSERLGIATTSCHGYIIGEHGDSSVPV 181
           D+LTY T K++G P  RVIGSGT +D+ARF+YL+ +  G+   S +  IIGEHGDS + V
Sbjct: 140 DVLTYATLKLTGFPAERVIGSGTIIDTARFQYLIGKLYGLDPQSVNADIIGEHGDSELAV 199

Query: 182 WSGVNIAGVRLSDLNKKIGTDSDPENWKELHEMVVKSAYEVIKLKGYTSWAIGLSLSQLV 361
           WS  +IAG+ L+D  ++  T  D +   E  +    +AY++I+ KG T + +   L +++
Sbjct: 200 WSHASIAGLSLADFCEESETKYDEQALNECFKETKNAAYDIIQRKGSTEYGVAAGLVRIL 259

Query: 362 RAILYNANSVHAVSTYLKGEHGIDEEVFLSLPCVLGHSGVSDVIRQPLTETELAQLRKS 538
            AI+ + N++  VS  L     I +  F S+P  L   G   +I   L++ E A+L +S
Sbjct: 260 AAIIRDENALLTVSG-LDSYSNIGDVCF-SMPRKLNKDGAHRIINAKLSKDEDAKLVES 316


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 122  ATTSCHGYIIGEHGDSSVPVWS 187
            + TSCHGY+I    D  V +W+
Sbjct: 1194 SVTSCHGYLIA-FNDEFVEIWN 1214


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -2

Query: 282 TISCNSFQFSGSESVPIFLFKSLSRTPAIFTPDHTGTLLSPCSPIIYPWQEVVAMPNLSE 103
           TIS NS Q S SE    F   S S TP I T     T +S  S +   +   ++  +++ 
Sbjct: 762 TISSNSSQNSASEPQTAFTSSSSSATPTI-TQSSISTSVSSQSSMNSSYSSPISSNSVTS 820

Query: 102 S 100
           S
Sbjct: 821 S 821


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 437 EVFLSLPCVLGHSGVSDVIRQPLTET 514
           E  L +PC + HSG++   R+ +TE+
Sbjct: 313 ENHLKIPCFILHSGLTTAQRRSITES 338


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +2

Query: 137 HGYIIGEHGDSSVPVWSGVNIAGVRLSDLNKKIGTDSDPENWKELHEMVVKSAYEVIKLK 316
           H   +   G    P      +A +RL    K++G      + KEL   V  +   ++ + 
Sbjct: 174 HSSCLEMAGSDRTPSMPATTLADLRLLQKAKELGKRL---SGKELPTRVGDNGDVMLDMT 230

Query: 317 GYTSWAIGLSLSQLVR 364
           GY S A  +++++L R
Sbjct: 231 GYKSSAANINIAELAR 246


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 140 HGR-K*LRCPTSRRAGNGILQN 78
           HGR + L+  TSR A NGIL+N
Sbjct: 452 HGRLQILKIHTSRMASNGILEN 473


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 221 LNKKIGTDSDPENWKELHEMVVKSAYEVI 307
           ++K  GT   PENW+E+++ + K   +V+
Sbjct: 1   MSKDYGTP--PENWREVYDEICKMKAKVV 27


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 489 TSDTPLWPKTQGRDRNTSSSIPCSPL 412
           TS+   W K   RD NT +SIP SPL
Sbjct: 590 TSENIDWLKHSLRDSNTENSIP-SPL 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,636
Number of Sequences: 5004
Number of extensions: 55779
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)