Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F20
         (563 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil...    27   2.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   4.4  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   5.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.8  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   7.7  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.7  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 372  NSSVLNSVITNFLHIKKGSTENRNNNSSRKWYNSPIMS---SAFASTV-WTS 229
            +S++ NS  T    I K ++ N N   S KWYNS   S   +A +STV W++
Sbjct: 3834 DSTITNSFTTASTSIMKTTSLNSN---SYKWYNSTTQSVYYNATSSTVPWSN 3882


>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 195

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 405 NSSP*HLH-TILNSSVLNSVITNFLHIKKGSTENRNNNSSRKWYNSPIMSSAFA-STVW 235
           +SS   +H TIL+ ++  S++  F+H+   S  + NN S   ++ + I+ + F   T W
Sbjct: 21  SSSTLEVHVTILHVNLAKSMLCGFIHV---SYTSPNNTSLTTYFEAEIIGNRFTFETKW 76


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 382  MQVLRRR--VPDW*TSTRYRSEG-YHVFCNANYRR 477
            ++ LRRR  VP+W     YR  G +H   N  YR+
Sbjct: 1204 LEALRRRQAVPEWYVDALYRGIGIHHSGLNRRYRQ 1238


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 336 LHIKKGSTENRNNNSSRKWYNSPIMSSAFASTV 238
           L+ KK S  +   ++  KWY+    S++++ST+
Sbjct: 318 LNAKKESLSSVLKSTKTKWYDFETFSNSYSSTI 350


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = -3

Query: 372 NSSVLNSVITNFLHIKKGSTENRNNNSSRKWYNSPIMSSAFASTVWTSLICT*SSSVIYP 193
           +SSV  +  T+  H    S+ + +++SSR   +S  +++  +ST  +++  T SSS    
Sbjct: 205 SSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSST 264

Query: 192 NIAIPHCSNVSFKLSPHACN*TS 124
           +  +P  +      +  A N TS
Sbjct: 265 SSEVPSSTAALALNASKASNHTS 287


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 273 SPIMSSAFASTVWTSLICT*SSSVIYPNIAIPHCSNVSFKLSPH-ACN*TSAV*SKYSYL 97
           SP+ S    S V  S IC+  ++V + N+A P    ++FK+ P+   +    V +   Y 
Sbjct: 394 SPLSSPLTNSNVSPSTICSPDNNVTFVNLA-PG-EKLTFKIEPNDLMDEEEVVENSNMYS 451

Query: 96  IGGRT 82
           I G+T
Sbjct: 452 IPGKT 456


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 531 FNNYISIITNTSYLLSFGSSIICIAEYV 448
           + NY  I  +T+Y L+FG S   I   +
Sbjct: 400 YQNYSPIFMSTTYALAFGLSFASITSVI 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,033
Number of Sequences: 5004
Number of extensions: 44861
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)