Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F20
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0661 + 5596739-5597047,5597125-5597703                           31   0.48 
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375...    29   2.6  
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071...    29   2.6  
11_01_0324 - 2428035-2428514                                           29   3.4  
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192...    28   5.9  
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864...    27   7.8  

>12_01_0661 + 5596739-5597047,5597125-5597703
          Length = 295

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 353 EFNTEEFRIVCKCYGEEFQIGKHPQGTEVKAITYSAMQI 469
           E+N E  +I+C+ Y E+ + G  P  T + +I YS + +
Sbjct: 6   EWNDENTKIICELYAEQVRAGNRP-STHLNSIGYSQVAL 43


>07_01_0503 -
           3751028-3751063,3751145-3751231,3751333-3751410,
           3751488-3751583,3752124-3752210,3752289-3752357,
           3752511-3752600,3752601-3752720,3752907-3753004,
           3753084-3753193,3753463-3753533,3753679-3753714,
           3753862-3753973,3754495-3754700
          Length = 431

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 71  EDDYVLPPIKYEYLDHTADVQLHAWGDSLKETFEQC 178
           E+DY+LP  + E +   +D+ L  WG  L    E C
Sbjct: 293 EEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEAC 328


>06_03_0079 -
           16301056-16301611,16301745-16301906,16306776-16307134,
           16307372-16307884
          Length = 529

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = +1

Query: 220 ADQRGPYRGSER*RHDGTVIPFS*RVVISVFGRT 321
           AD RG YRGS+  R DG   P   R  I V GRT
Sbjct: 341 ADGRGQYRGSDGGRKDGEATP---RREIRVRGRT 371


>11_01_0324 - 2428035-2428514
          Length = 159

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 278 ITVPSCRQRSLPRYGPL*SAHSRA 207
           +++PSC +R  PR G L +AH RA
Sbjct: 14  LSLPSCPRRRRPRAGDLGAAHRRA 37


>10_08_0147 +
           15218150-15218401,15218569-15218643,15219099-15219208,
           15219299-15219560
          Length = 232

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 350 LSLTFYISKKVRPKTEITTRQENGITVPS-CRQRSLPRYGPL*SAH 216
           L++ F++SK++R   E+  +     T P   RQ  L    PL + H
Sbjct: 96  LNIVFHVSKRIRKAVELARQYHFNYTTPDRSRQELLQHTTPLPTEH 141


>09_02_0408 -
           8638298-8638594,8638717-8639103,8639415-8640413,
           8640501-8640655,8640768-8640855,8640941-8641044,
           8641199-8641421,8641536-8641620,8641706-8642097,
           8642962-8643150
          Length = 972

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 65  LTEDDYVLPPIKYE--YLDHTADVQLHAWGDSLKETFEQCGMAMFGYMTELDYVQIKEVH 238
           L+EDD +   I+Y+   LD   DV     GD LK+  ++C      Y T+ D  ++ E+ 
Sbjct: 31  LSEDDKL---IEYDALLLDRFLDVLHGLHGDDLKDLVQECYEVAAEYETKHDVQKLDELG 87

Query: 239 TVEANAD 259
            +  + D
Sbjct: 88  NMITSLD 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,347
Number of Sequences: 37544
Number of extensions: 253846
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)