Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F20
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098499-2|AAC67396.1|  155|Caenorhabditis elegans Hypothetical ...   107   7e-24
Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z30215-4|CAA82936.1|  541|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF098499-2|AAC67396.1|  155|Caenorhabditis elegans Hypothetical
           protein C43H8.1 protein.
          Length = 155

 Score =  107 bits (256), Expect = 7e-24
 Identities = 52/152 (34%), Positives = 86/152 (56%)
 Frame = +2

Query: 65  LTEDDYVLPPIKYEYLDHTADVQLHAWGDSLKETFEQCGMAMFGYMTELDYVQIKEVHTV 244
           + ED   +   ++EYLDH AD+QLH+WG +++E FE C ++MFGYMT+L  V        
Sbjct: 6   MIEDRSEIERRRFEYLDHPADIQLHSWGSTMEEAFEACLVSMFGYMTDLAKVDEMYEFYW 65

Query: 245 EANADDMMGXXXXXXXXXXXXXSVEPFLICKKLVITEFNTEEFRIVCKCYGEEFQIGKHP 424
           +A+ D + G               EP  + K++ I  F+ ++F I  + +GE F   KH 
Sbjct: 66  KASGDSLDGLLFQFLDEALNSFHAEPCFVAKRVEILRFDKKKFEIEFRGWGESFDTSKHE 125

Query: 425 QGTEVKAITYSAMQIIDEPKDNKYEVLVIIDM 520
              ++K+ TYS MQI ++P+  + ++ VI+D+
Sbjct: 126 TEADIKSPTYSNMQINEKPE--RCDIYVIVDI 155


>Z68751-3|CAA92973.1|  760|Caenorhabditis elegans Hypothetical
           protein T05E11.3 protein.
          Length = 760

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 323 FLICKKLVITEFNTEEFRIVCKCYGEEFQIGKHPQGTEVKAITYSAMQIIDEPKD 487
           FL+  ++V+T  N ++ + + +     F I K P+G  +K  T   + + +E  D
Sbjct: 191 FLVADRVVVTTKNNDDDQYIWESDSASFTISKDPRGNTLKRGTQITLYLKEEAAD 245


>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 561 YIYIYINVYKFNNYISIITNTSYLLSFGSSIICIAE 454
           YIYIYI +Y +  YI I  +   + S  + I C+ E
Sbjct: 85  YIYIYIYIYVYGLYIFIAQSHKQIFSKFNIIFCLLE 120


>Z30215-4|CAA82936.1|  541|Caenorhabditis elegans Hypothetical
           protein F40F12.4 protein.
          Length = 541

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = -3

Query: 372 NSSVLNSVITNFLHIKK----GSTENRNNNSSRKWYNSPIMSSAFASTVWTSLICT*SSS 205
           + +++NS++  F+ +KK        +  N  + K+ N    S +  ST+  +++C+ + +
Sbjct: 328 SENLMNSMVGGFIILKKIKLRQPASHETNEINDKFINMASSSDSSISTICEAIVCSFNET 387

Query: 204 VIYPNIAIPHCSNV 163
               N+AI    N+
Sbjct: 388 EPCSNMAIQSDWNI 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,946
Number of Sequences: 27780
Number of extensions: 246158
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)