Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F20
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.70 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   0.70 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   3.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   6.5  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 546 INVYKFNNYISIITNTSYLLSFGSSIICIAEYVIAFTS 433
           + +YK+NN I  I  TSY   F    I + +Y I F S
Sbjct: 91  LKIYKWNNQILHILWTSYKKVFMKDNI-LRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 546 INVYKFNNYISIITNTSYLLSFGSSIICIAEYVIAFTS 433
           + +YK+NN I  I  TSY   F    I + +Y I F S
Sbjct: 74  LKIYKWNNQILHILWTSYKKVFMKDNI-LRQYFITFFS 110


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 363 VLNSVITNFLHIKKGSTENRNNNSSRKWYN 274
           +++S+    +H       N NNN  + +YN
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNCKKLYYN 110


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 555 YIYINVYKFNNYISIITNTSYLLSFGSSIICIAEYVIAFTSVPCG 421
           Y Y N   +NNY   +   +Y+++     + +  Y   F   P G
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNFPPRPMG 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,980
Number of Sequences: 438
Number of extensions: 3139
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)