Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_F19
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 28 0.14
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 23 4.1
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 23 5.4
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 23 5.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 23 5.4
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 23 5.4
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 23 7.2
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 23 7.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 7.2
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 23 7.2
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 23 7.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 23 7.2
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 22 9.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 22 9.5
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 28.3 bits (60), Expect = 0.14
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 58 KSPKAQLKSYARRNP-TAKNQQRSNSFVPESSVK 156
K+ KAQL+S A++NP A Q S SF P ++
Sbjct: 446 KARKAQLQSMAQKNPLAASGLQSSLSFTPIQGIE 479
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 55 VKSPKAQLKSYARRN 99
+++PK +LKSY R+N
Sbjct: 1 MEAPKMELKSYKRKN 15
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -1
Query: 111 FCCWVSSCVAF*LRFWGFY 55
F W +SC+ + W FY
Sbjct: 140 FAVWCASCLMIFISLWYFY 158
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 153 NTAFWHKRITSLLVFCCWVSSCVAF*LRFWGFYFC 49
N A + +TS+L + F L FWGF+ C
Sbjct: 134 NIAAEYTSLTSILQYWGPHVPSYGFFLIFWGFFTC 168
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 110 KTSKEVILLCQKAVLNDWDKLKNYFLA 190
+ S+ V + QK N WD L N FLA
Sbjct: 464 EVSEAVEVAFQKLSHNVWDTLLNEFLA 490
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 92 EETQQQKTSKEVILLCQKAVLNDWDKLKNYF 184
+++Q +KE+ LL + ++ KLKN+F
Sbjct: 189 KKSQLNTATKEISLLKKAKKFPNFPKLKNFF 219
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 55 VKSPKAQLKSYARRNPTAKNQQRSNSFVPESSVK*LGQIK 174
V SPK + +Y+R P N + N SS++ L +++
Sbjct: 361 VNSPKCPVFNYSRDGPMNVNGNQGNWPNYPSSIRPLAKVQ 400
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -1
Query: 156 FNTAF-WHKRITSLLVFCCWVSSCVA 82
++T F W I+ L CW S C+A
Sbjct: 430 YDTVFDWMLSISGLGTLFCWGSICLA 455
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 43 SSAKVKSPKAQLKSYARRNPTAKNQQRSNSFVPESSVK 156
S + V SP Q RNP +N + +SF ESS +
Sbjct: 420 SRSPVASPSIQTDP--NRNPFFQNCLQESSFATESSTE 455
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 25 KRRALVSSAKVKSPKAQLKSYARRNPTAKNQQRSNSFV 138
K+ +LV S + +K AR NP Q N F+
Sbjct: 153 KQASLVDSDQKPYQPILIKPKARANPPKLRNQPENDFI 190
>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 123 SLLVFCCWVS 94
S LV CCWVS
Sbjct: 6 SSLVHCCWVS 15
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 40 VSSAKVKSPKAQLKSYARRNPTAKNQQRSNSFVPESSVK 156
VS + + +K+ R P+AK ++ VPE+ K
Sbjct: 401 VSRTTYSAQSSSVKNCNERIPSAKALKKQKHLVPENKSK 439
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 83 ATHEETQQQKTSKEVILLCQKAVLNDWDKLKNYFL 187
AT E + E+I+ C K N + L Y+L
Sbjct: 686 ATENEPVLRPYVSEIIVKCMKLAPNSANSLNYYYL 720
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 141 WHKRITSLLVFCCWVSS 91
++KR+ +LL+F CW+ S
Sbjct: 957 FYKRLIALLLF-CWICS 972
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 76 LKSYARRNPTAKNQQRS 126
LK+Y R+NP N +++
Sbjct: 738 LKTYVRKNPLVDNSKKA 754
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,507
Number of Sequences: 5004
Number of extensions: 9400
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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