Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F19
         (225 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0043 + 15375459-15377606                                         26   4.7  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    25   6.2  

>01_04_0043 + 15375459-15377606
          Length = 715

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 177 FFNLSQSFNTAFWHKRITSLLVFCCWVSSCVA 82
           +  L+  + + +W   + S+LVF  WV SC+A
Sbjct: 314 YSKLTVFYASGWWFPVLNSMLVFATWV-SCLA 344


>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 48   GKSKIPKSAVKKLRTXXXXXXXXXXXXFFCARKQC*MIGT 167
            G   +P++ V KLR             FFC  K C MIG+
Sbjct: 1136 GNFVLPRADVMKLRDRLRNEEITAGS-FFCGVKNCLMIGS 1174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,139,850
Number of Sequences: 37544
Number of extensions: 52990
Number of successful extensions: 185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)