Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F19
         (225 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   28   1.4  
SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)                    27   3.2  
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   25   9.7  
SB_28651| Best HMM Match : ig (HMM E-Value=1.4e-09)                    25   9.7  

>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 40  VSSAKVKSPKAQLKSYARRNPTAKNQQRSNSFVPESSVK*LGQIKE 177
           VSS K +SP+  L+S+ +  P  KN  +    V E   K  GQ K+
Sbjct: 269 VSSPKCQSPQQLLRSWLKVTPPRKNSNKHMDDVREEGSK--GQKKQ 312


>SB_30749| Best HMM Match : FARP (HMM E-Value=0.032)
          Length = 2565

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 89   HEETQQQKTSKEVILLCQKAVLNDWDKLKNYF 184
            H E    K  K+V  +  K V  DW ++  Y+
Sbjct: 2362 HSEKTPGKACKQVKYIMSKKVRKDWTRISRYY 2393


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 168 LSQSFNTAFWHKRITSL 118
           +S + NT+FW+K+I SL
Sbjct: 89  VSSTTNTSFWNKKILSL 105


>SB_28651| Best HMM Match : ig (HMM E-Value=1.4e-09)
          Length = 221

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 168 LSQSFNTAFWHKRITSL 118
           +S + NT+FW+K+I SL
Sbjct: 89  VSSTTNTSFWNKKILSL 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,900,578
Number of Sequences: 59808
Number of extensions: 62422
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 16,821,457
effective HSP length: 52
effective length of database: 13,711,441
effective search space used: 301651702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)