Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F19
         (225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   0.80 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   0.80 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   3.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   7.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   7.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   9.9  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 0.80
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 132 RITSLLVFCCWVSSCVAF*LRFWGFYFCRRHQRAPLSPSSF 10
           R +S+L     VSSCV F + F  F F R   R  L P+ F
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLR--TRTKLQPTYF 40


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 0.80
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 132 RITSLLVFCCWVSSCVAF*LRFWGFYFCRRHQRAPLSPSSF 10
           R +S+L     VSSCV F + F  F F R   R  L P+ F
Sbjct: 2   RASSVLQAESDVSSCVIFGVLFVLFSFLR--TRTKLQPTYF 40


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 68  FGDFTFAEDTS 36
           FGDF F  DT+
Sbjct: 226 FGDFNFRTDTA 236


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 122 EVILLCQKAVLND 160
           E+ILLC+K    D
Sbjct: 240 EMILLCEKVAKED 252


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 122 EVILLCQKAVLND 160
           E+ILLC+K    D
Sbjct: 240 EMILLCEKVAKED 252


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 101  QQQKTSKEVILLCQKAVL 154
            +  K   +++  CQKAV+
Sbjct: 1312 EDMKRGNKILRTCQKAVV 1329


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 61  SPKAQLKSYARRNPTAKNQ 117
           SP+  +K+  + N   KNQ
Sbjct: 28  SPRTPIKNVYKNNIETKNQ 46


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 171 NLSQSFNTAFWHKRITSLLVFCCWVSSCVAF*LR 70
           +L ++  TA W K  + L +    VS+CV F L+
Sbjct: 194 DLVETDMTAQWLKENSRLALKPKDVSNCVLFALQ 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,055
Number of Sequences: 438
Number of extensions: 639
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)