Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F17
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    28   1.3  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   4.0  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   7.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.0  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    25   9.2  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 192 SNLKKAVGLIL---KLXFGGPTLIKF*KKVFQTXQXGPPFRVC 73
           S L+KA G++L    + F G T   F    F T    PP ++C
Sbjct: 88  SGLRKAHGILLWLLSILFLGMTAFMFVNDAFPTAFSDPPVKIC 130


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = +1

Query: 415 DEKPLTAAR--VGENKY-----QVSWTEEPAKARSGVHEINILDEEGWASLRRARR-SDP 570
           D+KP  AA   +G N       QVS   EP KA +   ++N LD+E   ++   ++ S+P
Sbjct: 534 DDKPSPAAAEDIGTNGAIEEIPQVSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593

Query: 571 TA 576
           TA
Sbjct: 594 TA 595


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 593 SNGATVAVGSERRARRSDAQPSSSR 519
           SN  T  +GSERR R  +A   SSR
Sbjct: 157 SNFRTFDIGSERRRRILEASQDSSR 181


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 298 SYLIYKFRRYS--CNSNSLYY*ISLKCDNPLPENYALYAEVD 417
           S LI  + RY+  C SN+L   ++++   P P N  L   +D
Sbjct: 259 SSLIANYLRYTKLCESNTLLNGLTIRPQKPTPTNCGLQHALD 300


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -2

Query: 511 FHELRSGPLLALQSRIPDTYFLQLEPLLMVFH 416
           F+ +++ PLL  ++ +P  YF  +  +  +F+
Sbjct: 183 FYGIQNDPLLCTRTHLPSKYFTSVSWMTQMFY 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,611
Number of Sequences: 5004
Number of extensions: 42880
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)