Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F17
         (638 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69043-1|CAA93157.1|  173|Homo sapiens translocon-associated pro...    73   9e-13
Z68129-2|CAA92215.1|  173|Homo sapiens translocon-associated pro...    73   9e-13
X90583-1|CAA62211.1|  173|Homo sapiens protein ( H.sapiens mRNA ...    73   9e-13
BT007192-1|AAP35856.1|  173|Homo sapiens signal sequence recepto...    73   9e-13
BC003371-1|AAH03371.1|  173|Homo sapiens signal sequence recepto...    73   9e-13
AK026711-1|BAB15535.1|  180|Homo sapiens protein ( Homo sapiens ...    30   6.0  

>Z69043-1|CAA93157.1|  173|Homo sapiens translocon-associated
           protein delta subunit precursor protein.
          Length = 173

 Score = 72.9 bits (171), Expect = 9e-13
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +1

Query: 358 ISLKCDNPLPENYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEG 534
           ISL C N + +N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE 
Sbjct: 53  ISLTCKNRV-QNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEES 111

Query: 535 WASLRRARR-SDPTATVAPLLAIQLHHPGSYSGPW 636
           ++ LR+A+R ++  + + PL  + + H G+++GPW
Sbjct: 112 YSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146


>Z68129-2|CAA92215.1|  173|Homo sapiens translocon-associated
           protein delta subunit precursor protein.
          Length = 173

 Score = 72.9 bits (171), Expect = 9e-13
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +1

Query: 358 ISLKCDNPLPENYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEG 534
           ISL C N + +N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE 
Sbjct: 53  ISLTCKNRV-QNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEES 111

Query: 535 WASLRRARR-SDPTATVAPLLAIQLHHPGSYSGPW 636
           ++ LR+A+R ++  + + PL  + + H G+++GPW
Sbjct: 112 YSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146


>X90583-1|CAA62211.1|  173|Homo sapiens protein ( H.sapiens mRNA for
           rat translocon-associated protein delta homolog. ).
          Length = 173

 Score = 72.9 bits (171), Expect = 9e-13
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +1

Query: 358 ISLKCDNPLPENYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEG 534
           ISL C N + +N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE 
Sbjct: 53  ISLTCKNRV-QNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEES 111

Query: 535 WASLRRARR-SDPTATVAPLLAIQLHHPGSYSGPW 636
           ++ LR+A+R ++  + + PL  + + H G+++GPW
Sbjct: 112 YSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146


>BT007192-1|AAP35856.1|  173|Homo sapiens signal sequence receptor,
           delta (translocon-associated protein delta) protein.
          Length = 173

 Score = 72.9 bits (171), Expect = 9e-13
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +1

Query: 358 ISLKCDNPLPENYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEG 534
           ISL C N + +N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE 
Sbjct: 53  ISLTCKNRV-QNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEES 111

Query: 535 WASLRRARR-SDPTATVAPLLAIQLHHPGSYSGPW 636
           ++ LR+A+R ++  + + PL  + + H G+++GPW
Sbjct: 112 YSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146


>BC003371-1|AAH03371.1|  173|Homo sapiens signal sequence receptor,
           delta (translocon-associated protein delta) protein.
          Length = 173

 Score = 72.9 bits (171), Expect = 9e-13
 Identities = 35/95 (36%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
 Frame = +1

Query: 358 ISLKCDNPLPENYALYAEVDEKPLTAARVGE-NKYQVSWTEEPAKARSGVHEINILDEEG 534
           ISL C N + +N ALYA+V  K     R  +  +YQVSW+ +   A +G +E+   DEE 
Sbjct: 53  ISLTCKNRV-QNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEES 111

Query: 535 WASLRRARR-SDPTATVAPLLAIQLHHPGSYSGPW 636
           ++ LR+A+R ++  + + PL  + + H G+++GPW
Sbjct: 112 YSLLRKAQRNNEDISIIPPLFTVSVDHRGTWNGPW 146


>AK026711-1|BAB15535.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23058 fis, clone LNG03818. ).
          Length = 180

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 574 QSGRSDERGGVTPNPPHPGC*FHELRSGP 488
           +SG   E+GG  P+PP P   +H   +GP
Sbjct: 73  ESGLHPEQGGAGPSPPSPSPPWHTREAGP 101


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,878,691
Number of Sequences: 237096
Number of extensions: 1843798
Number of successful extensions: 12016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12011
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)