Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F17
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    43   2e-04
AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin (...    29   3.7  
AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine re...    28   6.5  
Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    27   8.6  

>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 361 SLKCDNPLPENYALYAEVDEKPLTAARVGEN-KYQVSWTEEPAKARSGVHEINILDEEGW 537
           +L+C N  P+N    AEV+ + +  +   E  K+QVSWT E   A +    INI DEEG 
Sbjct: 47  TLQCSNN-PKNIQYTAEVNGRLIPVSISDETAKFQVSWTLEHKDAGAQTFNINIFDEEGA 105

Query: 538 ASLRRARRSDPTATV 582
           A   +   + P  TV
Sbjct: 106 AQYAKNPVTKPLFTV 120



 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 254 ISRGIAESCQNPKVEATSFTSLDATVVTQIAYITEF 361
           ++  +   C++PK  A+SF++ D     +  +ITEF
Sbjct: 11  VASALCAKCESPKYSASSFSTTDGFFHYKTTFITEF 46


>AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin
           (drosophila peroxidase)homolog protein 1 protein.
          Length = 1285

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 370 CDNPLPENYALYAEVDEKPLTAARVGENKYQVSWTEEPAK 489
           C NP+   +    EVD+  LT AR  E     SWT E  K
Sbjct: 207 CTNPVELRHQALDEVDDSALTCARPAEE----SWTGEEIK 242


>AF068710-1|AAC17772.1|  419|Caenorhabditis elegans Hypothetical
           protein T06A1.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 247 CLYKSRNRRELPKS*SRSYLIYKFRRYSC--NSNSLYY*ISLKCDNPLPENYALYAEVDE 420
           C+Y   NRRE+P S   S +I      SC     + Y  +S   D  +PE   L     E
Sbjct: 118 CIYYDCNRREIPSSRFASRVI-PLTVVSCPRRHGAEYMSVSFNKDEEIPEPIKLTFRAYE 176

Query: 421 KPL 429
           +P+
Sbjct: 177 QPV 179


>AC006748-1|AAF60514.2|  323|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 66 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 540 VTPPRSSLRPDCHCCSITRYSTPSSW 617
           +TP R+S+R    C S+ R ST  SW
Sbjct: 292 ITPYRNSIREFLECKSMPRGSTSGSW 317


>Z81484-7|CAE11296.1|  221|Caenorhabditis elegans Hypothetical
           protein C47A10.7 protein.
          Length = 221

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 172 WFNFKINXWWTNLNKILKKSFPNQXXRAPFPGLPAG 65
           W  F ++ W T+L  ++   F      APF G P G
Sbjct: 47  WSLFNVHIW-TSLMDVIMSFFAQPFLSAPFVGFPMG 81


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
           class iii (c) protein1 protein.
          Length = 1400

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 195 NSNLKKAVGLILKLXFGGPTLI 130
           N  +KKAVG +LK+ F  P  +
Sbjct: 164 NGTVKKAVGAVLKIAFASPVSV 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,941,361
Number of Sequences: 27780
Number of extensions: 253600
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)