Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F16
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      36   0.021
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      35   0.047
SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)                  31   0.77 
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      29   4.1  
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)               28   5.4  
SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)                   27   9.5  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
 Frame = +3

Query: 231 GAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG---KNDGGVLEHSGA--MFIDSKINV 395
           GA  ET DE+ T +    H           KE+     N G   E S A  +F+    ++
Sbjct: 5   GARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQKDFSI 64

Query: 396 YEQFKQDVQNTGVSEVNELPWXXXXXXXXX-INDFVRSATHEAIDEIVTPSELDGVL-LV 569
            ++F    Q    ++++ + +          +N +V   T + I +++ P   + +  L 
Sbjct: 65  LKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIAPGVFNMLTRLT 124

Query: 570 LIDALYFTGNWRVSF 614
           L++A+YF G W   F
Sbjct: 125 LVNAIYFKGMWDKPF 139


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 29/155 (18%), Positives = 64/155 (41%), Gaps = 4/155 (2%)
 Frame = +3

Query: 162 QETESHFVVSGLSAWAILSTLSFGAAEETFDEINTVLRLHPHVCFNRKYFNILKEIG--K 335
           Q+ +++   S  S    L+    GA   T  ++         V    K+ + L+ +    
Sbjct: 24  QDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDV--PEKFHDFLQALNASN 81

Query: 336 NDGGVLEHSGAMFIDSKINVYEQFKQDVQNTGVSEVNELPWXXXXXXXX-XINDFVRSAT 512
           +DG  +  +  +F      + E+FK+  + +  +E+  + +          +N +V   T
Sbjct: 82  SDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKT 141

Query: 513 HEAIDEIVTPSELD-GVLLVLIDALYFTGNWRVSF 614
            + I  ++     +   +L L++A+YF G+W   F
Sbjct: 142 KDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHF 176


>SB_48737| Best HMM Match : WD40 (HMM E-Value=1.5e-36)
          Length = 885

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 391 FIFESMNIAPECSKTPPSFLPISFKILKYFLLK---HTCGCS 275
           F  E+   A  C K  P+FL  S+K+L YF  K   + CG S
Sbjct: 652 FANEAEEKAQHCLKAEPAFLEKSWKVLDYFSFKSVRNLCGAS 693


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 486 INDFVRSATHEAIDEIVTPSELDGVL-LVLIDALYFTGNWRVSF 614
           +N +V   T   I E++    ++ +  L++++A+YF G W+  F
Sbjct: 101 VNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEF 144


>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
          Length = 511

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 322 FKILKYFLLKHTCGC 278
           +++++YFLL H CGC
Sbjct: 166 WRLMRYFLLTHLCGC 180


>SB_51515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 322 FKILKYFLLKHTCGCSLSTVLISSKVSSAA 233
           +++++YFLL H CG S  T    S + S A
Sbjct: 98  WRLMRYFLLTHLCGISHRTWCTLSTICSDA 127


>SB_55288| Best HMM Match : TLD (HMM E-Value=0.00092)
          Length = 349

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 322 FKILKYFLLKHTCGCSLSTVL 260
           +++++YFLL H CG   S +L
Sbjct: 62  WRLMRYFLLTHLCGLESSEIL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,898,136
Number of Sequences: 59808
Number of extensions: 327920
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)