Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F15
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.1  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   3.4  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   3.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   4.5  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   7.9  

>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = -1

Query: 521 SFENHWRCKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRLLGNCDLRGYSDHNYPTRKHL 342
           +++ +W CK  + L +    Y    ++  + + S  K   L    L  + D  +   KH 
Sbjct: 592 AWQEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNKHS 651

Query: 341 L 339
           L
Sbjct: 652 L 652


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 500 CKFRRYLMQTIVCYSLHEMIKKIGIASHQKKRL 402
           CK+     + I   +LHE +KK+    H K RL
Sbjct: 649 CKYSNIRKEIIARSNLHENLKKLLAIPHDKLRL 681


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/91 (21%), Positives = 34/91 (37%)
 Frame = +2

Query: 287 LGEGRKTRTGSVFTAANSKGVYGSGNYDLSNLEGRNFQEGVXXXXXXXXXXXXXHAGYNT 466
           LG   K  T S     N++ V       + +L    F+E +               GY  
Sbjct: 475 LGLSNKATTASETGTVNAEEVQTPVADVIGSLNHPPFEEHLQRLLLFPEVEKLFGHGYEV 534

Query: 467 QSSALSNGGTYSASDSQSSRYHQWIQRIFRT 559
            + A+SN G  +A+  +S      + R++ T
Sbjct: 535 YACAISNNGNIAATSCKSQTPEHAVIRLYET 565


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 257 PFGVALNHPYCARVQNSLPYFPSEHHKSQIYFLHPRNFWN 138
           P+ +AL     A +Q     + +E  KS ++ L PRNFWN
Sbjct: 799 PYILALKESADALMQFGSYEYATELLKSCLFLL-PRNFWN 837


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 235 IHIVRAFKIPSHISPLSTIKARFTSFIR 152
           ++I+R FK+ S  S LS IK      +R
Sbjct: 267 LNIIREFKLESDYSSLSAIKGHLFKLMR 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,502
Number of Sequences: 5004
Number of extensions: 39691
Number of successful extensions: 82
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)