Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F14
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.1  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   4.9  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   4.9  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.5  

>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 526 HGCRFQPLQRIRRTINKSTECGMKTTIN 443
           H    QP Q  + TINK+TE     T+N
Sbjct: 90  HDASNQPSQAAQTTINKNTESATPKTVN 117


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 416 DTNLWFYP*INCCFHSTFCT-FVYCPTNALEWLKATSMR 529
           D N+W Y   + C H   C  F  CP   L++ +  S +
Sbjct: 315 DDNIWGYDDGDLCIHFAGCNYFKNCPEKFLKYAQILSSK 353


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 156 WISLLWRH*WSSAWTARSTARL 221
           W+++ W   W S W AR  A++
Sbjct: 271 WMAIWWEIIWLSIWAARYAAKV 292


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 438 G*NHKFVSHCLQTKIGDMPPIKLISEFKETVGGCKLQ 328
           G  H  + HC Q+   +   I  +SE + T GGC  Q
Sbjct: 343 GYRHSDIHHCGQSLGCNCECIPELSEIESTSGGCVTQ 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,446
Number of Sequences: 5004
Number of extensions: 51370
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)