Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F14
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5640| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        28   6.7  
SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_5640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252 ERGRRTDITTRPMLPGARFYTHSTHFATYT-HPQFP 356
           E GRRT   T P  P  + Y HS +  TYT  P+ P
Sbjct: 30  EEGRRTLPETTPTFPEQKLYRHSPN--TYTIFPEIP 63


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 218 PGSTPRCPSGTPSMSPQKGY-PGTYLE-R*YS*TVLRELKYKVNQINCSM*SLK 63
           PGSTPR  S +PS S          LE +  S   ++EL+ KV Q+NC    +K
Sbjct: 395 PGSTPRSDSQSPSRSSSDQIDKHLSLEAQRRSQERIQELQQKVIQVNCEKQKIK 448


>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 426 YGFIRKLIVVFIPHSVLLFIVLRM 497
           YGF+  + V  IP ++L+FIV+RM
Sbjct: 203 YGFV--IFVYIIPSAILVFIVIRM 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,121
Number of Sequences: 59808
Number of extensions: 379826
Number of successful extensions: 778
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)