Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F14
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 VGVVESDIHAGCSYDIIGPFQIKSKKTVVCCVE 597
           VGV  S+ +    +DI+    ++++K   CC E
Sbjct: 197 VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE 229


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 VGVVESDIHAGCSYDIIGPFQIKSKKTVVCCVE 597
           VGV  S+ +    +DI+    ++++K   CC E
Sbjct: 197 VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDE 229


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 VGVVESDIHAGCSYDIIGPFQIKSKKTVVCCVE 597
           +GV  S+ +    +DI+    ++++K   CC E
Sbjct: 193 IGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDE 225


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 VGVVESDIHAGCSYDIIGPFQIKSKKTVVCCVE 597
           VG+  +D +    +DII    ++++   +CC E
Sbjct: 189 VGIDLTDYYISVEWDIIKVPAVRNEAFYICCEE 221


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 518 SLSTTPTHS*DNKQKYRMWNENNN*FTDK 432
           SLS    H+ + K  Y   N NNN +  K
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 518 SLSTTPTHS*DNKQKYRMWNENNN*FTDK 432
           SLS    H+ + K  Y   N NNN +  K
Sbjct: 83  SLSNNTIHNNNYKYNYNNNNYNNNNYNKK 111


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 499 VGVVESDIHAGCSYDIIGPFQIKSKKTVVCCVE 597
           +G+   + +    +DI+G    + KK   CC E
Sbjct: 188 IGIDLREYYPSVEWDILGVPAERHKKYYPCCDE 220


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,209
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)