Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F13
         (625 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    28   4.7  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   6.2  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 152 CTNCQLRRHLRCYGQGTYNWKRKSQAQC 235
           CT CQ   HL+C G  +  W   SQ QC
Sbjct: 256 CTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 413 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 520
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 24  LVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 182
           L++ LL  +    V+   PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 4   LINSLLFTIAILAVVWGYPGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 353
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>U46671-5|AAA85750.2|  147|Caenorhabditis elegans Hypothetical
           protein C14E2.5 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/76 (25%), Positives = 29/76 (38%)
 Frame = +3

Query: 330 TKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKD 509
           T   IP F   + A  K  LF  +N D   +   +    N   + NF +  +   Y  +D
Sbjct: 10  TAMEIPTFARALNAEPKSQLFLKENQDSQPRLLVSTAEKNGSVISNFKS--SWNHYYIED 67

Query: 510 KIGASATAAHTDVFKS 557
              +    + T VF S
Sbjct: 68  NSSSDENISQTTVFDS 83


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
           protein M116.5 protein.
          Length = 1064

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
 Frame = +3

Query: 294 AYDNVNGHGATLTKTHIPGFG--DKMTAAGKV----NLFHNDNHDFSAKAFATKNLPNIP 455
           AY ++N      T++    F   D    AG++    ++  N+N D         +L N P
Sbjct: 392 AYSDINSDSVPNTESLNLAFAAADPEFGAGRLLDAEDVDTNNNPDEKPVITYVSSLKNAP 451

Query: 456 QVPNFNTVGAGVDYMFKDKIG-ASATAAHTDVFKS**LLSGGKTESLQDS 602
           Q P  + + A     F+++IG   A A H  +F++  ++S  K E+LQ+S
Sbjct: 452 QDPEMSRLAASGGKGFEEEIGKLQADADH--IFEALAVMS--KDEALQES 497


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,438,284
Number of Sequences: 27780
Number of extensions: 337921
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)