Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_F12
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 28 0.58
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 28 0.76
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 1.0
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 2.3
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 4.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 5.4
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 5.4
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 25 7.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 7.1
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 9.4
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 24 9.4
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 24 9.4
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 24 9.4
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 9.4
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 28.3 bits (60), Expect = 0.58
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 221 DIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFYPRPIILPRDPERFPI 382
D+ L + YT + K ++ NY HLP PR +I R+P +F +
Sbjct: 843 DLVLTTHTNYTDMARAVANKLNVDPNYLQFTMAHLPSRTPRSVI--RNPSKFTL 894
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 0.76
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 280 FFAMRMNTASVPSVGVQFYIVND*RQYWMVTTRWRR*NVIALVQPQWFISSF 125
F+ RM + S V+ Y ND + W +T+ WR + +L++ W SF
Sbjct: 24 FYGRRMVSCSADQ-RVKVYDFNDDTETWAITSEWRAGDA-SLMRVAWAHPSF 73
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 197 PILPSIIDDIKLDPNRRYTRSIHSHREKRSLSR 295
PILP+++D + D N+ + I +EK +L++
Sbjct: 229 PILPAMLDLMSNDDNKMFVDDIVGFKEKATLNK 261
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 2.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 155 KGNDISPAPTSGDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSL-SRNY 301
K ND + +S + + P ++ K DPN RSIH + + + SR++
Sbjct: 608 KANDFRVSASSAVYTVGPELLQRKKRDPNTS-IRSIHEREQDKIIHSRSH 656
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 258 LRVYLLLGSSFISSMIEGSIGWSPLVGAGEMSLPL 154
L V LL + F+ I G I W+PL LPL
Sbjct: 169 LTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPL 203
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 5.4
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 161 NDISPAPTSG-DHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYY 304
+ +S P+ + PIL S +I+L P+ Y S +S+N Y
Sbjct: 84 DQVSGIPSGSLEIPILNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIY 132
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 5.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -3
Query: 228 FISSMIEGSIGWSPLVGAG 172
F+ G +GW P++G+G
Sbjct: 371 FVIRAFGGKVGWDPILGSG 389
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 245 RYTRS--IHSHREKRSLSRNYYTSFPIHLPPFYPRPIILPRDPERFPIYAS 391
+Y RS + S+R+ +YT P+ L + + L D +FP Y S
Sbjct: 393 KYLRSDVLASYRQPLVQKYTFYTRTPVDLNAWVEDSLALNIDTTQFPSYLS 443
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 272 REKRSLSRNYYTSFPIHLPPFYPRPIILPRDPERFPIY 385
R+ R + +YT I P+ RDP +FP++
Sbjct: 112 RDPRGFALKFYTDEGIFDMVGNNTPVFFLRDPAKFPLF 149
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = +2
Query: 128 AGDEPLRLYKGNDISPAP---TSGDHPILPSIIDDIKLD---PNRRYTRSIHSHREKRSL 289
A + P + YK + P+ +S H +L + + +L P R+YT S ++R+K ++
Sbjct: 119 ASEVPKKKYKKIKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQKGTM 178
Query: 290 SR 295
++
Sbjct: 179 TQ 180
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 311 KKYSNFSINFFFRDANEYCECTFC 240
K Y +F IN + + NEY T C
Sbjct: 57 KDYRDFMINSYRLEPNEYLTVTAC 80
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 302 YTSFPIHLPPFYPRPIILPRD 364
+ SFPIH+P F ++L +D
Sbjct: 342 HLSFPIHVPNFMITSLLLHKD 362
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 84 DLLRRGPSVFEDYGKL 131
DLL GPS+FE+ KL
Sbjct: 641 DLLTYGPSIFEELRKL 656
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 19 TDCVNDALGREFLSALHTTNIQTSSDEAHQYSKI 120
T C REFLS + TT+++T + ++I
Sbjct: 229 TKCKRVLRWREFLSTVFTTSLETDERDFESENRI 262
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 221 DIKLDPNRRYTRSIHSHREKRSLS 292
DI++ NRRY + + E++ LS
Sbjct: 271 DIRVSENRRYLKELQEFCEQKDLS 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,997
Number of Sequences: 5004
Number of extensions: 36416
Number of successful extensions: 105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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