Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F12
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41725-1|AAD09360.1| 1502|Homo sapiens PTPsigma-(brain) protein.       29   7.3  
U40317-1|AAC50567.1| 1911|Homo sapiens PTPsigma protein.               29   7.3  
U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphat...    29   7.3  
S78080-1|AAB21146.2|   87|Homo sapiens protein-tyrosine phosphat...    29   7.3  
BC104812-1|AAI04813.1| 1501|Homo sapiens protein tyrosine phosph...    29   7.3  
AC005788-1|AAC62834.1| 1399|Homo sapiens PTPsigma [AA 524- 1926]...    29   7.3  
AB209333-1|BAD92570.1| 1560|Homo sapiens protein tyrosine phosph...    29   7.3  
AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein...    29   9.7  

>U41725-1|AAD09360.1| 1502|Homo sapiens PTPsigma-(brain) protein.
          Length = 1502

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 1073 TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1122


>U40317-1|AAC50567.1| 1911|Homo sapiens PTPsigma protein.
          Length = 1911

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 1482 TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1531


>U35234-1|AAC50299.1| 1948|Homo sapiens protein tyrosine phosphatase
            sigma protein.
          Length = 1948

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 1519 TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1568


>S78080-1|AAB21146.2|   87|Homo sapiens protein-tyrosine phosphatase
           protein.
          Length = 87

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209 SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
           +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 17  TLLDTIELATFCVRTFSLHKNGSSEKRDVRQFQFTAWPDHGVPEYPTPFL 66


>BC104812-1|AAI04813.1| 1501|Homo sapiens protein tyrosine
            phosphatase, receptor type, S protein.
          Length = 1501

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 1072 TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1121


>AC005788-1|AAC62834.1| 1399|Homo sapiens PTPsigma [AA 524- 1926]
            protein.
          Length = 1399

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 992  TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1041


>AB209333-1|BAD92570.1| 1560|Homo sapiens protein tyrosine
            phosphatase, receptor type, sigma isoform 3 precursor
            variant protein.
          Length = 1560

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 209  SIIDDIKLDPNRRYTRSIHSH--REKRSLSRNYYTSFPIHLPPFYPRPII 352
            +++D I+L      T S+H +   EKR + +  +T++P H  P YP P +
Sbjct: 1114 TLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFL 1163


>AF439153-1|AAL31641.1|  485|Homo sapiens Ro/SSA1 related protein
           FLJ10369 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 188 GDHPILPSIIDDIKLDPNRRYTRSIHSHREKRSLSRNYYTSFPIHLPPFYPRPIIL 355
           G   IL +   D++LDP+  Y+R I S   KR    +     P +   FY   I+L
Sbjct: 293 GLREILKTYAGDVRLDPDTAYSRLIVSEDRKRVHYGDTNQKLPDNPERFYRYNIVL 348


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,807,276
Number of Sequences: 237096
Number of extensions: 1219572
Number of successful extensions: 6630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6630
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)