Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F12
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 266 NEYCECTFCW-GPVLYRQ*LKAVLDGHHSLAQVKCHCP 156
           N  CECT  + GP   R+        H +   V+CHCP
Sbjct: 40  NGKCECTLRYEGPQCERERCLNGGRRHSAKGTVRCHCP 77


>Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC376.7c protein.
          Length = 474

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 240 LGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPASRNLRI 109
           L +S  SS   G   + P++       P +NLS SS AS  LR+
Sbjct: 251 LMTSSTSSPDSGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRL 294


>Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical
           protein ZC376.7b protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 240 LGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPASRNLRI 109
           L +S  SS   G   + P++       P +NLS SS AS  LR+
Sbjct: 249 LMTSSTSSPDSGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRL 292


>Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical
           protein ZC376.7a protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 240 LGSSFISSMIEGSIGWSPLVGAGEMSLPLYNLSGSSPASRNLRI 109
           L +S  SS   G   + P++       P +NLS SS AS  LR+
Sbjct: 265 LMTSSTSSPDSGISLYDPMIPPPSSHFPSFNLSSSSSASNLLRL 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,727
Number of Sequences: 27780
Number of extensions: 197500
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)