Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F11
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    25   6.5  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   6.5  

>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 272 QL*KKVGTRIISPRTQRNIHSQSLCCARL 358
           +L KKV   ++ P T++N+ +  + C +L
Sbjct: 267 KLLKKVFLDVVKPNTKKNLETCGILCGKL 295


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 349 CTTAGGGESYEPSREAHTQGREVLSAQG 432
           C+T+ G    EP RE      E L+A+G
Sbjct: 530 CSTSNGSTLEEPDRELIIAQMETLAAEG 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,066
Number of Sequences: 5004
Number of extensions: 29386
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)