Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F10
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          214   3e-56
11_01_0155 - 1287003-1287452                                          214   3e-56
03_06_0097 - 31632238-31632525,31633386-31633769                       43   1e-04
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    38   0.005
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    30   1.1  
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303     29   1.4  
11_01_0523 - 4109070-4109984,4110532-4110936                           28   4.4  
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986...    28   4.4  
01_03_0227 + 13967966-13968559                                         28   4.4  
03_05_0077 - 20547070-20547108,20547407-20547697                       27   5.8  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  214 bits (523), Expect = 3e-56
 Identities = 95/143 (66%), Positives = 119/143 (83%)
 Frame = +3

Query: 3   REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 182
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 183 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 362
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 363 PRRCEPKKFGGPGARARYQKSYR 431
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  214 bits (523), Expect = 3e-56
 Identities = 95/143 (66%), Positives = 119/143 (83%)
 Frame = +3

Query: 3   REPIQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKF 182
           R P   VQ FGRKKTA AV+YCK G G+++VNG P++L+ P +L+ K  EPILL G+ +F
Sbjct: 7   RPPPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRF 66

Query: 183 SGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 362
             +D+R+ V+GGG  +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+KDI  +YDR+LLVAD
Sbjct: 67  KDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVAD 126

Query: 363 PRRCEPKKFGGPGARARYQKSYR 431
           PRRCEPKKFGG GARAR+QKSYR
Sbjct: 127 PRRCEPKKFGGRGARARFQKSYR 149


>03_06_0097 - 31632238-31632525,31633386-31633769
          Length = 223

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
 Frame = +3

Query: 15  QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLV---EPRLLQYKLQEPILLLGKEKFS 185
           Q +   GR+KTA A    + G G + +N R         P  ++Y  + P++ LG E  +
Sbjct: 96  QRITATGRRKTAIARVVLQEGTGRVFINFRDAKEYLQGNPMWMEY-CKVPLVTLGFE--N 152

Query: 186 GVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADP 365
             D+ V V GGG   Q  AI   +++AL+      +  A+K  ++         LL  D 
Sbjct: 153 SYDVFVKVHGGGLSGQAQAICLGVARALVK-----ISTANKVTLR------GEGLLTRDT 201

Query: 366 RRCEPKKFGGPGARARYQKSYR 431
           R  E KK G   AR R Q S R
Sbjct: 202 RIVERKKAGLKKARKRPQFSKR 223


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 26/79 (32%), Positives = 38/79 (48%)
 Frame = +3

Query: 33  GRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVK 212
           G++K + A  + + G G   VN +  D   P +L ++          +     D+  TVK
Sbjct: 295 GKRKCSIARVWIQPGDGKFIVNDKQFDSYFP-ILDHRADLLRPFTVTKTLGRWDVTCTVK 353

Query: 213 GGGHVAQVYAIRQAISKAL 269
           GGG   QV AIR  IS+AL
Sbjct: 354 GGGVSGQVGAIRLGISRAL 372


>04_03_0024 -
           9623178-9624001,9624502-9624678,9625144-9625305,
           9625520-9626032,9626801-9629153
          Length = 1342

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 227 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 406
           CTG+  Q S   S Y F  +I +  +  G+ +  S    K   R  +++R ++  + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784

Query: 407 CQIP 418
            ++P
Sbjct: 785 VRLP 788


>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
          Length = 462

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 50  NCGSILQTRTWSVACKWTPPRPGRTQTSS 136
           +C S +Q R+ SV   W PP  G+T+T S
Sbjct: 275 DCVSAMQQRSSSVRLIWGPPGTGKTKTIS 303


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 213 GGGHVAQVYAIRQAISKALIAFY 281
           GGG    V  +++A++KAL+AFY
Sbjct: 48  GGGGFFDVGRLKEALAKALVAFY 70


>04_04_1154 -
           31297628-31298020,31298150-31298300,31298389-31298620,
           31298700-31298910,31299137-31299255,31299341-31299415,
           31299991-31300189,31300258-31300664,31300775-31300839,
           31300967-31301011,31301449-31301520,31301597-31301671,
           31301912-31301983,31302178-31302249,31302525-31302596,
           31302880-31302951,31303056-31303127,31304064-31304135,
           31304375-31304561,31304686-31304815
          Length = 930

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 96  NGRPLDLVEPRLLQYKLQEPILLL 167
           NG PLD V+P+L ++  +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830


>01_03_0227 + 13967966-13968559
          Length = 197

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 383 EIRWSRRPCQIPEILPLISF 442
           E RW+RRP Q+P  +  +SF
Sbjct: 71  EQRWTRRPTQVPPPITAVSF 90


>03_05_0077 - 20547070-20547108,20547407-20547697
          Length = 109

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 311 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQ 412
           GDQR  S    + +GR    L   E  W+RR C+
Sbjct: 4   GDQRGDSPSSHELSGRLEGILADGEAPWARRACK 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,653
Number of Sequences: 37544
Number of extensions: 304074
Number of successful extensions: 875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)