Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F09
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   4.7  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    24   6.2  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    24   8.2  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   8.2  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 151 IINIQFLMLNFSYILERALIFLIKMKNK 68
           I+ I   +  FS+++ R +IF I + NK
Sbjct: 41  ILPIIITLFIFSFVISRMIIFFISLFNK 68


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 142 YLLF*TFSLQFASVTIYLFEWF*FPTAYTLLLSQGPVCSMLKLGLDSDAHFKRH 303
           Y+LF  FSL   S+ +Y   W      +  L+    +  ++ +G+     +K+H
Sbjct: 177 YILFWMFSLLVGSLVVYFTAWRQITFTWITLMF---ISMIIPIGISFSKLWKKH 227


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -2

Query: 331 GATASLTAICAS*NARHCPNQA*ASNTPVLAIITECRR 218
           G T S  A+  + N    PN   A  TP     TE  R
Sbjct: 14  GTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETER 51


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 127 LNFSYILERALIFLIKMKNK*YKNVKLRIRSNK 29
           +N+ ++LER  +++  + N  YK +   I   K
Sbjct: 531 VNYGHVLERQNVYIEDLSNPSYKRLAREIHIEK 563


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,182
Number of Sequences: 5004
Number of extensions: 23930
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)