Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F09
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1092 + 34469732-34470118                                         29   1.5  
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667...    28   2.5  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    28   2.5  

>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -1

Query: 344 DPVCGSDGVTY 312
           DPVCG+DGVTY
Sbjct: 64  DPVCGADGVTY 74


>07_03_0823 +
           21765960-21766064,21766166-21766327,21766616-21766741,
           21766831-21766956,21767519-21767698,21768204-21768452
          Length = 315

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 84  LK*KINSIKMLNYEYVQINKNYILCV 7
           LK K   +K++N+E  ++ KN +LCV
Sbjct: 275 LKAKDRVMKLMNHENAEVRKNALLCV 300


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 194  CSNGFSFPPPTLCYYRKDRCVR-CSSLVWTVTRIL 295
            CS G S   P + Y R  RC++ CS L   + R+L
Sbjct: 1024 CSGGLSPVAPGILYLRIFRCIKDCSILAEDILRLL 1058


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,259,558
Number of Sequences: 37544
Number of extensions: 141238
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)