Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F09
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    43   6e-05
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    40   7e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    40   7e-04
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    38   0.002
U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine rece...    27   3.9  
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (...    26   9.1  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 43.2 bits (97), Expect = 6e-05
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 341 PVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGPC 240
           PVCG+D VTY+NLC L+C   +   L   + G C
Sbjct: 27  PVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTC 60



 Score = 38.3 bits (85), Expect = 0.002
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLK---CASLSKPSLSIEHTGP-CDNN 231
           C    DP+CG++GVT++N C L+   C S +  ++ + +TG  CD N
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICES-ANSTIEVAYTGMCCDTN 817



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGPC 240
           CT +K P+C SD  TY NLC  +        L +   G C
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKC 629



 Score = 33.5 bits (73), Expect = 0.045
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
 Frame = -1

Query: 341  PVCGSDGVTYSNLCLL---KCASL--SKPSLSIEHTGPCDN 234
            PVC ++GVT++N+CL+    C  +  +K ++ + + G C N
Sbjct: 931  PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCN 971



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = -1

Query: 338  VCGSDGVTYSNLCLL---KC--ASLSKPSLSIEHTGPC 240
            VC S+G T+ N C+    +C   ++S+ +L+I HTG C
Sbjct: 1030 VCDSEGQTHMNHCVYQQRRCMAQTISQKTLNIVHTGEC 1067



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 359 CTR-EKDPVCGSDGVTYSNLCLLK 291
           CT  E DPVC ++G  Y NLC+ +
Sbjct: 119 CTNTEFDPVCDTNGSVYRNLCVFQ 142



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLK---CA--SLSKPSLSIEHTGPC 240
           C +  DPVC +   T+ N+C  K   C    +    + I H+G C
Sbjct: 257 CDKSWDPVCDTRNRTHKNVCQFKFFACKINKIDGSVIDIAHSGAC 301



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASLSKPSLSI-----EHTGPCDNNR 228
           C+R+  PVC     T+ NLC  +  + +   L I      +  PC  NR
Sbjct: 375 CSRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPCVKNR 423



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLC 300
           C  +  PVC S G T+ N+C
Sbjct: 818 CPSDFSPVCDSKGSTHQNIC 837


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLK-CASLSKPSLSIEHTGPCD 237
           CT E   VCGSDG TYSN C L+  A +++ ++ +++   C+
Sbjct: 468 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 509



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPCD 237
           CT     VCG+DG TY N C LK A+   +  + +   G CD
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCD 364



 Score = 34.7 bits (76), Expect = 0.020
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 338 VCGSDGVTYSNLCLLK 291
           VCGSDG TYSNLC LK
Sbjct: 880 VCGSDGTTYSNLCELK 895



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPC 240
           C     PVC ++G T+ N C +K  S  +K  + ++H G C
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 437



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCAS--LSKPS--LSIEHTGPC 240
           C    D VCGSD V+YS+ C L   S  L+K    L +   GPC
Sbjct: 169 CRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPC 212



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 341 PVCGSDGVTYSNLCLLKCAS 282
           P+CGSDG+ Y+N C L   S
Sbjct: 693 PICGSDGIVYNNQCHLNTIS 712



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 350 EKDPVCGSDGVTYSNLC-LLKCASLSKPSLSIEHTGPCD 237
           E   VCG+DGVTYS+ C + K A      +     G CD
Sbjct: 547 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 585



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 338 VCGSDGVTYSNLCLLKCASLSK 273
           +CG +GV Y +LC L+ AS  K
Sbjct: 619 ICGENGVLYPSLCHLQLASCQK 640


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLK-CASLSKPSLSIEHTGPCD 237
           CT E   VCGSDG TYSN C L+  A +++ ++ +++   C+
Sbjct: 476 CTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACE 517



 Score = 35.9 bits (79), Expect = 0.009
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPCD 237
           CT     VCG+DG TY N C LK A+   +  + +   G CD
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCD 372



 Score = 34.7 bits (76), Expect = 0.020
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = -1

Query: 338 VCGSDGVTYSNLCLLK 291
           VCGSDG TYSNLC LK
Sbjct: 819 VCGSDGTTYSNLCELK 834



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCASL-SKPSLSIEHTGPC 240
           C     PVC ++G T+ N C +K  S  +K  + ++H G C
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKSMIKVKHQGTC 445



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLLKCAS--LSKPS--LSIEHTGPC 240
           C    D VCGSD V+YS+ C L   S  L+K    L +   GPC
Sbjct: 177 CRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPC 220



 Score = 30.7 bits (66), Expect = 0.32
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 350 EKDPVCGSDGVTYSNLC-LLKCASLSKPSLSIEHTGPCD 237
           E   VCG+DGVTYS+ C + K A      +     G CD
Sbjct: 555 EGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 593



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 338 VCGSDGVTYSNLCLLKCASLSK 273
           +CG +GV Y +LC L+ AS  K
Sbjct: 627 ICGENGVLYPSLCHLQLASCQK 648


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -1

Query: 359 CTREKDPVCGSDG---VTYSNLCLLKCASLSKPSLSIEHTGPCDNNR 228
           C  E DPVC  +G    TYSN C+ +CA  +K  L + + G C + R
Sbjct: 27  CKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSCCSAR 73



 Score = 30.3 bits (65), Expect = 0.42
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 359 CTREKDPVCGSDGVTYSNLCLL---KCASLSK--PSLSIEHTGPC 240
           C  E +PVC   G T++N C     KC   ++   SL ++++G C
Sbjct: 125 CPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVC 169



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
 Frame = -1

Query: 338 VCGSDGVTYSNLC---LLKC----ASLSKPSLSIEHTGPC 240
           VC S+G T++++C   + KC      + K  L I   GPC
Sbjct: 183 VCDSEGNTHTDICSFYIAKCRQMRRGIGKKRLQIAGVGPC 222


>U53141-1|AAA96103.1|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein117 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 163 RMFKIINIQFLMLNFSYILERAL--IFLIKMKNK*YKNVK 50
           ++F ++  QFL L+FS +  RAL    + KM  +  K V+
Sbjct: 251 KLFPVLFFQFLTLSFSMVFLRALEGFIMFKMNERIDKGVR 290


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 347 KDPVCGSDGVTYSNLCLLKCASLSKPSLSIEHTGP 243
           KD   GS+G  YS  C ++   +  PS   +  GP
Sbjct: 305 KDRPTGSEGNWYSGPCFIEFIDVLLPSYKRDFNGP 339


>AF016428-3|AAO26000.3|  445|Caenorhabditis elegans Ground-like (grd
           related) protein18 protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -2

Query: 256 NTPVLAIITECRRWETKTIRTSILSQMRTEGRMFKIINIQFLMLNFSYILERALIF 89
           N P+L  + E +   + +I   ++    TE  M + +N+     +FSY++  + IF
Sbjct: 374 NNPILKDLMEMKMTTSPSISKQMIYSAATEMWMGRNVNVICSKHSFSYVVVTSPIF 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,511,992
Number of Sequences: 27780
Number of extensions: 138008
Number of successful extensions: 351
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)