Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F07
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   1.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   3.2  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.3  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    22   9.6  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 13  QARTAFTNSALLLAEQYGFDGIDLSWQLPK 102
           Q  T F  S+L +A   G+D I L W L K
Sbjct: 531 QGVTEFVPSSLGVALAKGYDEIGLEWSLTK 560


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 4   ESPQARTAFTNSALLLAEQYGFDGIDL 84
           ES Q   A  NS   LAE + FD  D+
Sbjct: 517 ESAQMIDAHINSIFTLAEPFAFDAPDV 543


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 56  SARRRAELVKAVRACGD 6
           +AR+R+ L+ A+R+ GD
Sbjct: 390 AARKRSSLLTAIRSLGD 406


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 41  AELVKAVRACGDS 3
           A+ V+AV+ACG+S
Sbjct: 174 ADAVEAVKACGES 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,150
Number of Sequences: 5004
Number of extensions: 4436
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)