Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F07
         (140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       38   0.001
04_03_0649 - 18402976-18403220,18403305-18404499                       38   0.001
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184...    26   3.7  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    26   3.7  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 19  RTAFTNSALLLAEQYGFDGIDLSWQLP 99
           R AF NS++ LA   GFDG+DL+W+ P
Sbjct: 139 RRAFINSSIELARANGFDGLDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 10  PQARTAFTNSALLLAEQYGFDGIDLSWQLP 99
           P +R AF  +A+ +A + GFDG+D++W+ P
Sbjct: 141 PASRAAFIGAAVKVARENGFDGLDVAWRFP 170


>08_01_1069 +
           10916376-10916448,10917331-10918031,10918222-10918443,
           10918526-10919351,10919437-10919574,10920431-10920569,
           10920655-10920781,10921895-10921936,10922089-10922160,
           10922491-10922589,10922694-10922735,10922947-10923027,
           10923129-10923179,10923265-10923346,10923741-10923835,
           10924739-10924810,10924907-10925023,10925176-10925244,
           10925507-10925573,10925709-10925950
          Length = 1118

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 22  TAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSI 132
           TAF  S +L+  +   D ID+ W    R PK+ R+ +
Sbjct: 300 TAFIRSNILMLNR---DEIDILWDAKDRFPKEFRAEV 333


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 31   TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSS 129
            T +A++L ++YG      +  LPK++ KKI+ S
Sbjct: 1550 TKAAVILEQKYGLQLDQDTSDLPKKRGKKIKLS 1582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,161
Number of Sequences: 37544
Number of extensions: 29666
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)