Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F07
         (140 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   0.77 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   0.77 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    20   3.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    18   9.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    18   9.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 13  QARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKI 120
           ++ T   N AL LAE Y   G  +S    KR+  K+
Sbjct: 879 ESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKV 914


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 13   QARTAFTNSALLLAEQYGFDGIDLSWQLPKRKPKKI 120
            ++ T   N AL LAE Y   G  +S    KR+  K+
Sbjct: 917  ESSTDSRNPALALAEPYNQRGTVVSPPPTKRRTMKV 952


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 4  ESPQARTAFTNSALLLAE 57
          E+ +ARTAFT   L+  E
Sbjct: 7  EARRARTAFTYEQLVALE 24


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 79  DLSWQLP 99
           DL WQLP
Sbjct: 300 DLHWQLP 306


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 128 LERIFFGFLF 99
           + R+FF FLF
Sbjct: 404 VSRVFFPFLF 413


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
          protein JHBP-1 protein.
          Length = 253

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 86 DRSIPSKPY 60
          DRS+P K Y
Sbjct: 32 DRSLPQKEY 40


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 77  IPSKPYCS 54
           +PSKP C+
Sbjct: 405 VPSKPMCA 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,750
Number of Sequences: 438
Number of extensions: 233
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)