Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F06
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.50 
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   2.0  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   6.2  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    25   8.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   8.2  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -2

Query: 461 TTAVSSVKAGHSIDVVISGKTPEDKMAGILLEARQGDKI-VGTWTVSPDDTFSQPLNCGE 285
           TT   + ++G S DVV+     +D     L +A +  K  V   ++    +  +PL  GE
Sbjct: 423 TTDPINDESGASSDVVVIDDEEDDIENRPLNQALKASKAAVSNASLLQSSSLDRPL-LGE 481

Query: 284 PNNAVTHKMHAKELDRQTVSYPWT 213
             +   HK+    LD   +SYPW+
Sbjct: 482 MKDK-NHKVLMPSLDDPMLSYPWS 504


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 149 FWVGIESAPVKVLSH*IMSVIITYLMST 66
           F +GI++A + VL+H I +VI+T   S+
Sbjct: 321 FVIGIQNAEIPVLNHIINAVILTSACSS 348


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = -2

Query: 329 VSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTI 168
           ++P D   +PL   EP   VT  +  K      VS P  AP     DV F  +I
Sbjct: 67  LNPKDELEEPLFSEEPLFPVTTSIPTK----TAVSKPKIAPTSAAKDVTFSSSI 116


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 181 SRSPLSRATPSSGSESNQP 125
           SR P  RATPS+G +   P
Sbjct: 435 SRQPTVRATPSTGKQIEPP 453


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
          3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 13 IIYKYNCCIFLMFVIQINVDI 75
          ++  Y CC+FL F++  NVD+
Sbjct: 2  LLLLYICCLFLKFIL-ANVDL 21


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 482 VPAPYTITTAVSSVKAGHSIDVVISG 405
           VP+P+  +TA SS +  +S+D+  SG
Sbjct: 184 VPSPFGASTASSSSRRVYSVDLRDSG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,375
Number of Sequences: 5004
Number of extensions: 43983
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)