Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F06
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0178 + 6195402-6199158,6199438-6200003                           29   2.7  
06_01_0070 + 582659-583426,583535-583624,584130-584208,584387-58...    28   3.5  
04_03_0118 - 11474060-11475298                                         28   3.5  
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844...    28   4.7  
03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269     27   6.2  
06_03_1220 - 28505306-28508497                                         27   8.2  

>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236  VCLILWHASCGSRRYLVHHS*GVARRYHRG-LRSKCRRSCHPDELPG 373
            VCL   H  CG R  L+      +R Y    L+  C    HP E+ G
Sbjct: 1137 VCLHWCHTDCGLRHSLIRKGGSGSRAYSTNELQFHCAACGHPSEMFG 1183


>06_01_0070 +
           582659-583426,583535-583624,584130-584208,584387-584493,
           584619-584740,585003-585030,587148-587390,587986-588153,
           589133-589226,589648-589746,589995-590150,590379-590629
          Length = 734

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 156 RRLLGRNRISPRKGSKSLNHVSHHHLLDVNINLYYKH*KYT 34
           R+L  R+R    K +K L  +  HH++ V  +LY    KYT
Sbjct: 520 RKLAYRHRAIGEKYTKGLEKILDHHMIKVWNDLYSATDKYT 560


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 308 RRYHRGLRSKCRRSCHPDE 364
           R+YH   R  C  SC+PDE
Sbjct: 304 RKYHAIFRKHCTPSCYPDE 322


>01_07_0232 +
           42182942-42183490,42183593-42183661,42184320-42184451,
           42184547-42184600,42184714-42184758,42185383-42185522,
           42185777-42185902,42185985-42186002,42186631-42187276,
           42188121-42188843
          Length = 833

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 313 VSSGLTVQVPTILSP*RASRRMPAILSSGVLPL 411
           VSS   + +P + SP +ASRR+ A+  S  LPL
Sbjct: 19  VSSQPPLHLPRLRSPHQASRRLSALPFSRALPL 51


>03_03_0146 - 14835236-14835445,14835525-14835714,14836740-14837269
          Length = 309

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +3

Query: 270 HGVIWFTTVEGLREGIIGAYGPSADDL-VTLTSFQE--DAGHFVFG 398
           H  +W   +E + E  +G  G  ADD+   L S  E  D+G+  FG
Sbjct: 142 HAALWVKEIEKMEEARLGGGGGGADDIDRLLDSCSEIFDSGNTDFG 187


>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 365 ARQGDKIVGTWTVSPDDTFSQPLNCG 288
           +R GD IVG W  SPD      + CG
Sbjct: 43  SRAGDGIVGEWQRSPDCCTWDGVGCG 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,891,549
Number of Sequences: 37544
Number of extensions: 319734
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)