Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F06
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                29   1.6  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)                 28   4.8  
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)              27   6.4  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_17991| Best HMM Match : GRP (HMM E-Value=7.5)                       27   8.4  
SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)            27   8.4  

>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 227 KQSVCLILWHASCGS--RRYLVHHS*GVARRYHRGLRSK 337
           +  + L+LW  + GS  RR+++HH  G  +  H+ L  K
Sbjct: 37  RPKIALLLWVLNRGSKDRRFVIHHGQGNHKSNHKNLHKK 75


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/60 (25%), Positives = 34/60 (56%)
 Frame = -1

Query: 276 RRDPQDACQRIRQTDCFLPLDSS*GLRRRRCVQGHHCQELRRLLGRNRISPRKGSKSLNH 97
           R++ ++  QR+++T   +   +  GL RR+C+Q    QE+R    +   S +  +++++H
Sbjct: 31  RKEAENELQRLKKT---VNNTTHLGLERRKCLQSFKSQEIRVFGSKGANSSKDETENIDH 87


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 458 TAVSSVKAGHSIDVVISGKTPEDK 387
           T+V  +K G  I+VVIS K PED+
Sbjct: 72  TSVEQMKEGTVIEVVISAKVPEDE 95


>SB_44479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 281 NNAVTHKMHAKELDRQTVSYPWT-APKDLEGDVVFKVTIVKS 159
           ++AVT K+  K  DR+ +S PW   P D+   V      V S
Sbjct: 100 DSAVTVKVRVKVRDREIISIPWVPEPPDISRPVTLSQNAVTS 141


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 329 RSKCRRSC-HPDELPGGCRPFC 391
           R++C R C +P+ +PG C P C
Sbjct: 250 RTECSRDCPNPEPIPGQCCPIC 271


>SB_29132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 273 GVIWFTTVE-GLREGIIGAYGPSADDLVTLTSFQEDA 380
           GV WF  ++  +R  I GA GP+ +     T   EDA
Sbjct: 285 GVSWFALLKVNIRSSIAGAGGPAMEAQTEFTKLLEDA 321


>SB_5699| Best HMM Match : DUF689 (HMM E-Value=3.8e-10)
          Length = 333

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -1

Query: 267 PQDA-CQRIRQTDCFLPLDSS*GLRRRRCVQGHHCQELRRLLGRNRISPRKGSKSLNHVS 91
           P D  C R+R     +P  S    R       HH + LR    R R  P K  K LN VS
Sbjct: 257 PTDVDCGRVRGLAAVIPSLSIGNFRISILGIEHHKRRLRPCDKRKRAGPNKNVKQLNGVS 316


>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 155 AVFWVGIESAPVKVLSH*IMSVIITYLMST---LICITNIKNIQ 33
           AV++V +E  P+K +    +S+ I    +    LIC+T+ KN+Q
Sbjct: 260 AVYYVDMEKYPLKCIKSPAVSITIETNKTPPPDLICVTSSKNLQ 303


>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
          Length = 717

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -2

Query: 389 KMAGILL-EARQGDKIVGTWTV---SPDD-TFSQPLNCGEPNNAVT 267
           K+ GI L   ++G K+V +WTV   +P    F+ P   G+P+  +T
Sbjct: 625 KVKGIFLWHVKKGGKVVSSWTVDLKTPGGAVFTGPPKGGKPDTTIT 670


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = -2

Query: 440  KAGHSIDVVISGKTPE---DKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAV 270
            ++G      +SG  P+       G L  AR  ++  G  T +P  +  +P     P   V
Sbjct: 1281 RSGEVTSTSVSGNPPKLSPVSEVGTLDFARMMEEFQGFGTSAPVPSLPEPPEI--PALLV 1338

Query: 269  THKMHAKELDRQTVSYPWTAPKDLEGDVV 183
            T  + +K+LDR+T   P T P + E + V
Sbjct: 1339 TGSI-SKDLDRKTSGLPNTTPDNAERENV 1366


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 285  FTTVEGLREGII-GAYGPSADDLVT-LTSFQEDAGHFVFGCFAADNHVNGMTSF 440
            F T+  +++ I   A+   +  L+T  T+F   A H+ F CF AD   NG   F
Sbjct: 2271 FGTIANVQKKISEAAFTDDSPTLITNATTFTIRASHYEFSCFVADIG-NGTVGF 2323


>SB_17991| Best HMM Match : GRP (HMM E-Value=7.5)
          Length = 186

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 353 DKIVGTWTVSPDDTFSQPLNCGEPNNAVTHKMHAKELDRQTVSYP 219
           D +  T + S D T+    N G P + VT     + LDR T +YP
Sbjct: 85  DLVTNTTSASSDVTYK---NHGSPYDEVTATSTYQSLDRTTRTYP 126


>SB_1658| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.16)
          Length = 458

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -2

Query: 395 EDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNC-GEPNNAVTHKMHAKELDRQTVSYP 219
           +DK+   L E +QGD+ +G  T +  D   Q  +   E  N   ++M   + D Q     
Sbjct: 257 KDKVISTLREGKQGDESMGAVTSAEFDEVCQERDALKEELNQTRYRMEQVKTDLQDAEQH 316

Query: 218 WTAPKDLEGDVV 183
             A  D+  + V
Sbjct: 317 QQAEADIAQEKV 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,116,077
Number of Sequences: 59808
Number of extensions: 377159
Number of successful extensions: 1300
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)