Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F05
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.97 
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                29   1.7  
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)           27   6.9  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)          27   9.1  
SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       27   9.1  
SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_55084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 325 YLCDVAMFVICSDNTTRSVINHASSTGNSVAMSDGLEFCS 206
           Y  + ++   CS N+T  V N A  + NS +    + FCS
Sbjct: 21  YFSNASLAAFCSTNSTSGVSNIAFCSANSTSGVSNMAFCS 60


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 274 SVINHASSTGNSVAMSDGLEFCSKRYHIID 185
           ++I++ S TGN + +  GL +C K Y++ D
Sbjct: 94  NMISNLSHTGNPIQLPYGLAWCGKYYNMCD 123


>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
          Length = 410

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 269 YASCGVVATNDEHCHVTEIDPKKPYPECCPDIKC 370
           YA   +    D++C+VT IDPK  +      ++C
Sbjct: 56  YAGITLAGKLDDYCNVTLIDPKDCFHHSIGALRC 89


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 253 STGNSVAMSDGLEFCSKRYHIIDFFYVAAFLMCQFLW 143
           STGN  A++ G  F  + Y+ +  FY+ A L     W
Sbjct: 41  STGNFSALTVGFRFRREVYYYLFRFYIPASLTVVMSW 77


>SB_48591| Best HMM Match : Galactosyl_T (HMM E-Value=2.1e-33)
          Length = 336

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 334 LGVYLCDVAMFVICSDNTTRSVINH 260
           LG  LCD+  FV   D+ + + INH
Sbjct: 287 LGTVLCDLLSFVCFGDSLSAANINH 311


>SB_2814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +2

Query: 125 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMIDYASCGVVATNDE 304
           GAL    KE   ++ C+I  + D++   T   P          G  +++AS G + T   
Sbjct: 272 GALSNYQKETDREKECHIPPLKDLIATKT---PSDLLVEDRSRGIRLEWASAG-LTTGSI 327

Query: 305 HCHVTEIDPKKPY 343
              +T  +P  PY
Sbjct: 328 PTAITSSEPSVPY 340


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 128 ALPKKPKELAHKEGCYIKEINDV-VPFGTELK 220
           AL  KPK+L       IKE+ D  VP G E K
Sbjct: 536 ALMSKPKDLEKTGAPVIKELKDTSVPIGQEAK 567


>SB_35068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 332 KKPYPECCPDIKCDSEND 385
           K+P+P+C P  +C+  N+
Sbjct: 498 KRPWPDCAPQEECEKYNE 515


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,162
Number of Sequences: 59808
Number of extensions: 298411
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)