Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F04
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.6  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.1  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.4  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 356 CWSSSCQIPRYQDPLRGGSRRSGD 285
           CW+S+  I ++    +G  R  GD
Sbjct: 371 CWNSTPSIVQWMQDQKGWGRSEGD 394


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 GHYGFHVHEKGDISG 235
           G YG H H+ G ++G
Sbjct: 9   GFYGSHHHQSGSVAG 23


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  LSPIWSGRTSEAILR 131
           L P+W G  SEA+ R
Sbjct: 220 LPPVWQGGESEALAR 234


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 179 GLPPGHYG 202
           G+PP HYG
Sbjct: 59  GIPPHHYG 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,931
Number of Sequences: 336
Number of extensions: 2847
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)