Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_F04
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 117 1e-27
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.2
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 26 2.8
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 26 2.8
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 26 3.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 3.7
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 4.9
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom... 25 4.9
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 117 bits (281), Expect = 1e-27
Identities = 62/145 (42%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Frame = +2
Query: 83 RAIAHLVGEN-IRGNITFTRLP-DGKVHVEGSIVGLPPG-HYGFHVHEKGDISGGCGSTG 253
RA+A L G++ + G +TF ++ + +V V +VG GFH+H+ GD + GC S G
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 254 SHFNPENKEHGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAITGAHGILGRAVVLHE 433
HFNPE K HG + RHVGDLGN E D + K D +++ GA+ I+GR +V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122
Query: 434 RADDFGRTDHPDSRKTGNAGGRVAC 508
DD G+ +S KTGNAG R AC
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNAC 147
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 269 ENKE-HGHPSDENRHVGDLGNAEFDKNYSSKIDMIDPHLAI 388
ENK HG D+ D + E K Y+SKI+ ID + I
Sbjct: 85 ENKSVHGMTIDDIMDEEDRADQELSKVYTSKINTIDTSIPI 125
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 2.8
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 107 ENIRGNITFTRLPDGKVHVEGSIVGLPPGHYGFHVHEKGDISGGCGSTGSHFNPE-NKEH 283
EN+ + TR+ DGK V + G + F H+ ++ G S+F+ E + H
Sbjct: 30 ENVFMKLVMTRMLDGKTEVIPLTTDVHNGFWRFGRHKSCEVVLN-GPRVSNFHFEIYQGH 88
Query: 284 GHPSDENRHV 313
+ SDE+ +V
Sbjct: 89 RNDSDESENV 98
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 257 HFNPENKEHGHPSDENRH 310
H N + EH HPS E+ H
Sbjct: 380 HLNGSSGEHSHPSHEHTH 397
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 189 GGSPTIDP-STWTLPSGSRVNVILPLMFSPT 100
GGS P S + +PS S VN+ PL+ SP+
Sbjct: 395 GGSMPKGPNSIYKIPSASMVNLSSPLVTSPS 425
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 308 HVGDLGNAEFDKNYSSKIDMIDPHL 382
HV + GN FD + S + ++D L
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 4.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 248 TGSHFNPENKEHGHPSDENRHVGDLGN 328
T + +PE+ G PSD N LGN
Sbjct: 462 THKNISPESSRFGTPSDPNSSSQSLGN 488
>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 387 LPEHTGFSAGLWFYTSGLMISAALTTQIREKPAT 488
LP+ F+ G F +GL L Q++ KP T
Sbjct: 134 LPDGVSFNEGAGFGIAGLTAWEVLVRQMKVKPGT 167
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 175 DRSFYVDLAVRQPSERNIASDVLP 104
D S Y+ ++ PSE ++AS ++P
Sbjct: 213 DASSYITFSIPVPSEFSLASHIIP 236
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 498 RPPALPVFLESGWSVRPKSSARSCRTTALPRIPCAPVM 385
+PPA PV E+ +P ++ + + P+ P APV+
Sbjct: 516 QPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVV 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,161,761
Number of Sequences: 5004
Number of extensions: 45435
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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