Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F02
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   183   1e-47
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.57 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.3  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   3.0  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.0  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.0  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    24   9.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    24   9.3  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   9.3  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  183 bits (445), Expect = 1e-47
 Identities = 86/110 (78%), Positives = 100/110 (90%)
 Frame = +3

Query: 111 EKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVKGPVRMPTNVLRITTRK 290
           +K Q   S +HRIRITLTSRNVR+LEKVCSDL+N AK ++LRVKGPVR+PT +L+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 291 TPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 440
           TP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 0.57
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 93   VSGKDIEKPQAEISPIHRIRITLTSRNVRSLEKVCSDLINGAKKQKLRVK 242
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 84  AAVVSGKDIEKPQAEISPIHRIRITLTSRNVRS 182
           A V +  D+EKPQ +++   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 228 KLRVKGPVRMPTNV---LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITS 398
           K R  G +  P  V   LR    KT  G G    +    ++  R+ DLH   E   +I +
Sbjct: 785 KSRENGTIPRPLYVISHLRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKA 842

Query: 399 INIEPGVEVEVTI 437
           + +  G+E+E+TI
Sbjct: 843 VILRDGIEMEITI 855


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 209 QWSQETKTPCKGSSPNADQCSPHH 280
           Q  ++ K  C G  P+ DQC  H+
Sbjct: 73  QSCRKKKVKCSGERPSCDQCLKHN 96


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 333 MRIHKRVIDLHSPSEIVKQITSINIEPGV 419
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 344 VDAHLESVPSLGTLTARCFTCCDAENIG 261
           + A L+++ SLG       TC  AEN G
Sbjct: 52  IQADLKTMTSLGVYGMSAITCLVAENAG 79


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 285 RKTPCGEGSKTWDRFQM 335
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 354 IDLHSPSEIVKQITSINIEPGVEVEVT 434
           ID  SPS I  ++ S N+E G    VT
Sbjct: 545 IDGESPSSISSRLPSSNLEQGSSSSVT 571


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 43  KVVYLDRNIATTWQPLSCQERISRSPRLRSH 135
           K +Y D   ++   P   Q R+ ++P +R+H
Sbjct: 322 KNLYTDNKDSSLVSPTGLQSRMEQNPEVRAH 352


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -3

Query: 307 PSPQGVLRVVMRRTLVGIRTGPFTR 233
           P PQ ++ +     L G+   PF R
Sbjct: 176 PQPQAIMHLETSSNLTGVTVNPFNR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,619
Number of Sequences: 5004
Number of extensions: 39315
Number of successful extensions: 94
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)