Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_F01
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1448 - 26593041-26593266,26593417-26593442,26593906-265939...    29   1.3  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    29   1.7  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   4.0  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     27   5.3  
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    27   7.0  
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513...    27   7.0  
11_06_0081 + 19886848-19888050,19888243-19888896                       27   9.2  
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    27   9.2  

>07_03_1448 -
           26593041-26593266,26593417-26593442,26593906-26593990,
           26594098-26594229,26594307-26594450,26594524-26594582,
           26594651-26594957,26595482-26595563,26595640-26595773,
           26595858-26595951,26596022-26596145,26596407-26596466
          Length = 490

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = -2

Query: 251 VQIFHVNWSQAV-PIIFANNTAVRVNLCKVYDKQDINKTKKHIHPTNSYITS-IRNK 87
           VQ+ H N+ QAV  II + +TA+ + L       D++K    + PT +++ + ++NK
Sbjct: 420 VQLIHTNYLQAVSKIIASKSTAISITLQGKSSTDDLSK----LQPTQAHVVNYMKNK 472


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 353  HMVILDASNSSGARIVRQALWS 288
            HM ILD  N  G  ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 171 AKVNADCGIVSKDDW-DGLTPVHVEYL 248
           A +  DC I+S+ +W D LT + V YL
Sbjct: 530 ANLGMDCAIISEGEWADTLTDISVGYL 556


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +3

Query: 195 IVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTND--ACAARVRSIQDYHMDTLQY 368
           +++ DDW G   + ++ L+ P + ++  +     CL      C+   +  + Y +D L +
Sbjct: 411 VMNIDDWKGALTIKIDNLSEPKRALLWSYQKLDPCLQRCFLYCSLFPKGYK-YIIDELVH 469

Query: 369 WDIGSAFLIGGNRKKYMKD 425
             +   F+   +  K M+D
Sbjct: 470 LWVAEGFIDARDTNKRMED 488


>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 251 VQIFHVNWS-QAVPIIFANNTAVRVNLCKVYDKQDINK 141
           V  F+  W+   V I FA  TA+  + C VY K+++ K
Sbjct: 163 VFFFYTQWTFLLVTIYFAFATAISAHGCWVYSKKNLKK 200


>03_06_0125 +
           31850858-31850905,31851032-31851109,31851221-31851337,
           31851346-31851642,31852498-31852509,31852737-31852822,
           31853516-31853660,31853767-31853862,31854333-31854424,
           31854696-31854797,31854891-31855037,31855116-31855266,
           31855418-31855480,31855570-31855806,31856081-31856185,
           31856263-31856376,31856459-31857037,31857279-31857286,
           31857858-31858004,31858077-31858203
          Length = 916

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 113 SYITSIRNKYEINTG*LQSNLCSFYNIYEINPFPRD 6
           S ++ +RN++E  T   Q +L S+Y + E +PF  D
Sbjct: 733 STMSYLRNQHETPTVCRQEHLSSYYMMSECSPFDGD 768


>11_06_0081 + 19886848-19888050,19888243-19888896
          Length = 618

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 263 ACHNPAHGHSTMLDERCVRRSS*KHPGL-PYGYVTILGHRFSIPNWWKPQKVYEGSG 430
           +C   A      L ERCVRR +   PG+       ++ H  S   W    + Y  SG
Sbjct: 555 SCPREAVAMMVKLIERCVRRDAAARPGMGEVAQHLLMLHGVSGDGWHSSLEHYRSSG 611


>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 266 KLHWAVQIFHVNWSQAVPIIFANNTAVRV---NLCKVYDKQDINKTK 135
           + HW +   H +     PI+FA   A      +  KV+DK    K++
Sbjct: 294 RTHWELSASHTHKHSGKPIVFAGTIAAATLSPSSLKVFDKHSAPKSE 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,409
Number of Sequences: 37544
Number of extensions: 285478
Number of successful extensions: 649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)