Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_F01
(450 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical ... 31 0.51
Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 29 1.6
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 29 1.6
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 29 2.1
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 29 2.1
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 27 6.3
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 27 6.3
AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pomb... 27 6.3
AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pomb... 27 6.3
Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z70034-7|CAA93856.1| 855|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical ... 27 8.3
>AF026204-2|AAB71251.2| 247|Caenorhabditis elegans Hypothetical
protein C30E1.6 protein.
Length = 247
Score = 30.7 bits (66), Expect = 0.51
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = -3
Query: 199 TIPQSALTFAKFTINKI*TKQRSIFILQTHILRLYGTNTR*TLGSCKVICVLFIIFMR*T 20
TIP +++F+ F K+ F + + + T T+ +GSC ++ + F++ +
Sbjct: 118 TIPNFSISFSIFLWAKLQVLIYFFFYIVRKAIIEHKTFTKSFIGSCTLLIIAFVLLEFAS 177
Query: 19 RFREIF 2
RF E+F
Sbjct: 178 RFLELF 183
>Z46812-6|CAA86848.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 29.1 bits (62), Expect = 1.6
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 332 SNSSGARI--VRQALWSVRVLDYDKLHWAV-QIFHVNWSQAVPIIFANN--TAVRVNLCK 168
SN R+ +RQ + V +Y+ L + + + V+W V ++ +N T + +L
Sbjct: 288 SNCEEERVEQLRQLARKLPVHNYETLKFIMLHLNRVSWFHEVNLMSTSNLSTVIAPSLIW 347
Query: 167 VYDKQ-DINKTKKHIHPTNSYI-TSIRNKYEINTG*LQSNLCSFYNIYEINPFPRD 6
+ K+ D H TN I IRN Y I Q++ SF++ Y + P++
Sbjct: 348 MSPKRIDHTSAIMHTQYTNKAIEVMIRNSYHIFGMDRQADWQSFFSRYSVEEPPKE 403
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 29.1 bits (62), Expect = 1.6
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 332 SNSSGARI--VRQALWSVRVLDYDKLHWAV-QIFHVNWSQAVPIIFANN--TAVRVNLCK 168
SN R+ +RQ + V +Y+ L + + + V+W V ++ +N T + +L
Sbjct: 517 SNCEEERVEQLRQLARKLPVHNYETLKFIMLHLNRVSWFHEVNLMSTSNLSTVIAPSLIW 576
Query: 167 VYDKQ-DINKTKKHIHPTNSYI-TSIRNKYEINTG*LQSNLCSFYNIYEINPFPRD 6
+ K+ D H TN I IRN Y I Q++ SF++ Y + P++
Sbjct: 577 MSPKRIDHTSAIMHTQYTNKAIEVMIRNSYHIFGMDRQADWQSFFSRYSVEEPPKE 632
>Z37093-8|CAA85469.2| 546|Caenorhabditis elegans Hypothetical
protein ZK669.1b protein.
Length = 546
Score = 29.1 bits (62), Expect = 1.6
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 332 SNSSGARI--VRQALWSVRVLDYDKLHWAV-QIFHVNWSQAVPIIFANN--TAVRVNLCK 168
SN R+ +RQ + V +Y+ L + + + V+W V ++ +N T + +L
Sbjct: 288 SNCEEERVEQLRQLARKLPVHNYETLKFIMLHLNRVSWFHEVNLMSTSNLSTVIAPSLIW 347
Query: 167 VYDKQ-DINKTKKHIHPTNSYI-TSIRNKYEINTG*LQSNLCSFYNIYEINPFPRD 6
+ K+ D H TN I IRN Y I Q++ SF++ Y + P++
Sbjct: 348 MSPKRIDHTSAIMHTQYTNKAIEVMIRNSYHIFGMDRQADWQSFFSRYSVEEPPKE 403
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 29.1 bits (62), Expect = 1.6
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Frame = -2
Query: 332 SNSSGARI--VRQALWSVRVLDYDKLHWAV-QIFHVNWSQAVPIIFANN--TAVRVNLCK 168
SN R+ +RQ + V +Y+ L + + + V+W V ++ +N T + +L
Sbjct: 517 SNCEEERVEQLRQLARKLPVHNYETLKFIMLHLNRVSWFHEVNLMSTSNLSTVIAPSLIW 576
Query: 167 VYDKQ-DINKTKKHIHPTNSYI-TSIRNKYEINTG*LQSNLCSFYNIYEINPFPRD 6
+ K+ D H TN I IRN Y I Q++ SF++ Y + P++
Sbjct: 577 MSPKRIDHTSAIMHTQYTNKAIEVMIRNSYHIFGMDRQADWQSFFSRYSVEEPPKE 632
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +3
Query: 273 IQHTDTPQCLTNDACAARVRSIQDYHMD 356
+QH+ P+ + +AC+ +SI YH++
Sbjct: 60 VQHSRMPRHMEQEACSLAAKSIMTYHLE 87
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 156 FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTN 308
F+++ A + G + D+ L+ + +Y N PV ++ + T TP+ +T+
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTD 422
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 156 FIVNFAKVNADCGIVSKDDWDGLTPVHVEYLNRPVKLVIIQHTDTPQCLTN 308
F+++ A + G + D+ L+ + +Y N PV ++ + T TP+ +T+
Sbjct: 372 FVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTATATPKIVTD 422
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 129 MLLCFVYILFIVNFAKVNADCGIVSK 206
ML+CF++IL I A A+C V +
Sbjct: 1 MLICFIFILLIPESATCPAECVCVDR 26
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 129 MLLCFVYILFIVNFAKVNADCGIVSK 206
ML+CF++IL I A A+C V +
Sbjct: 1 MLICFIFILLIPESATCPAECVCVDR 26
>AC024810-16|AAO21412.2| 684|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform b protein.
Length = 684
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 234 HVEYLNRPVKLVIIQHTDTPQ 296
HVE L P K VI++H +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184
>AC024810-15|AAF60769.1| 741|Caenorhabditis elegans Cdt (s. pombe
licensing factor)homolog protein 1, isoform a protein.
Length = 741
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 234 HVEYLNRPVKLVIIQHTDTPQ 296
HVE L P K VI++H +PQ
Sbjct: 164 HVELLKSPKKPVIVEHHKSPQ 184
>Z92807-5|CAB07265.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 127 ICFFVLFISCLS*TLQRLTRTAVLLAKMIGTA*LQFTWN 243
ICF +L T T A L+ +IGT +++TW+
Sbjct: 346 ICFLILTFM----TFNGYTGLAFLIVNLIGTVFIEYTWD 380
>Z70034-7|CAA93856.1| 855|Caenorhabditis elegans Hypothetical
protein C18E9.7 protein.
Length = 855
Score = 26.6 bits (56), Expect = 8.3
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 266 KLHWAVQIFHVNWSQAVPIIFANNTAVRVNLCKVYDKQDINKTKKHIHPTNSYITSIRN 90
KL W ++H S + I F A + +V +K++ K + P+NSY SIRN
Sbjct: 404 KLAWDWPVYHDFKSYKIVISFGIGRAESKEM-EVTNKEEFVLLDK-LDPSNSYSISIRN 460
>AL021482-5|CAA16342.1| 480|Caenorhabditis elegans Hypothetical
protein K11D9.3 protein.
Length = 480
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 127 ICFFVLFISCLS*TLQRLTRTAVLLAKMIGTA*LQFTWN 243
ICF +L T T A L+ +IGT +++TW+
Sbjct: 346 ICFLILTFM----TFNGYTGLAFLIVNLIGTVFIEYTWD 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,859
Number of Sequences: 27780
Number of extensions: 255391
Number of successful extensions: 653
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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