Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E24
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   4.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   5.5  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    25   5.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 268  WHSKLLAVFDGGQPETEFICKVMASTTFTVTFY 170
            W+S+ L      QP  E ICK+     F   F+
Sbjct: 1748 WYSRGLGFHALSQPSRELICKMTELNFFAADFF 1780


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 270 SGIANCWLSSMVVSQKLSLFA 208
           S +  C L+SMVVS  +SLFA
Sbjct: 426 STVPTCMLASMVVSLGVSLFA 446


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 334 FDTNCTSGYTF*ETSRLKCLSLWHSKLLAVFDGG 233
           F  + TS ++F   S+L  L L+ SKL+   D G
Sbjct: 186 FKLDLTSLFSFSSKSQLNALCLYQSKLIVGRDNG 219


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -1

Query: 278 SVALA*QTVGCLRWWSARN*VYLQSDGKYHLHRYIL*MVSLGNLLN 141
           S+ +  QT+   ++ S+ + +Y + DG YH    +L   ++ + LN
Sbjct: 190 SLKIILQTIDLFKYDSSFSSIYFRKDGPYHKVEKLLKSANIRSSLN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,168
Number of Sequences: 5004
Number of extensions: 43760
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)