Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E23
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 28 0.38
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 27 0.51
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 26 1.2
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 25 2.7
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 3.6
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 24 4.7
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 24 4.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 24 6.3
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 23 8.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 23 8.3
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 23 8.3
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.9 bits (59), Expect = 0.38
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 154 SFTPVDDNHTLISNFYPVIVHKHRVGGSFSHLHHEGF 44
S P+ N T++ N+Y ++ KH +F H H E +
Sbjct: 328 SDNPITANSTIL-NYYDIVTIKHMGTNAFLHSHPEKY 363
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 27.5 bits (58), Expect = 0.51
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 166 RAAHSFTPVD-DNHTLISNFYPVIVHK 89
R AH +T D ++H+L N Y V VH+
Sbjct: 401 RFAHGYTEADGESHSLPENVYSVFVHQ 427
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 1.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 154 SFTPVDDNHTLISNFYPVIVHKHRV 80
S T + N L+ NFY V++ HR+
Sbjct: 97 SLTQMTGNEPLLKNFYNVLLDNHRL 121
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 2.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 245 YPYWMTDEVYGLNKERQGEILMY 313
+PY++ V G++KE +GEI +
Sbjct: 106 FPYYVYTTVAGIDKEGKGEIYSF 128
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 143 WRKGVRRSLSEDDKYSYFTED 205
WR+ R L EDD SY ++D
Sbjct: 5 WREQEGRGLFEDDANSYVSDD 25
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 4.7
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +2
Query: 113 VTDKSMVVIDWRKGVRRSLSEDDKYSYFTEDVDL 214
+ +++ D KG+R+ L D+ +TE++ +
Sbjct: 109 IDSAEVIIYDATKGLRKHLDSIDRNRKYTEEIHI 142
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.2 bits (50), Expect = 4.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 117 LIRVWLSSTGVKECAAR 167
LIR+W S TG K C R
Sbjct: 199 LIRIWNSETGEKICEFR 215
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 305 VSLLDALCSNRTLRQSSNTDNSYEGNTC 222
+S+ + L ++ +LR SS++ YE +TC
Sbjct: 661 LSIAEILPADESLRYSSSSVPFYESSTC 688
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 224 MYYLHMNYPYWMTDEVYGLN 283
+Y ++ N PYW T YG+N
Sbjct: 440 LYTINPNEPYWFT---YGIN 456
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 158 RRSLSEDDKYSYFTEDVDLNTYMYYLHMNYPYWMTDEVYGLNKERQGEI 304
R +L+ D F D LN + N +W T+E G + +++ E+
Sbjct: 270 RLALTTDANLKAFQRD--LNAKKLHWPKNVEWWKTNEFGGFHLKKKAEM 316
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = -3
Query: 136 DNHTLISNFYPVIVHKHRVGGSFSHLHHEGFVDDMGVYK 20
D +S +YP HK + G ++ G +D +Y+
Sbjct: 93 DEKEAVSKYYPQFYHKTDIDGRPVYVEQLGNIDLKKLYQ 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,718
Number of Sequences: 5004
Number of extensions: 20372
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -