Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E21
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    26   2.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    25   3.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   3.7  

>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 41  NITTTFVSSNSGHEL*QNNLCFMVSPHSGRAG 136
           N+T  F+  N  +    N+L F+V+ H G +G
Sbjct: 233 NVTRDFIHQNPQYLAQNNSLDFIVNDHQGLSG 264


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 141 QRGFYIGEIAKRAERGLFYSKSTLATRTASCVAKPLRILC 260
           QR   +  +AK  E   F+S+      T   ++ P + LC
Sbjct: 413 QRYIMLSSLAKTREADFFWSEEEKTNYTNELLSNPCKFLC 452


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 160 EKSRSEQSAAFSIVKARWQLGPPAVW 237
           EKSR ++S  FS V  R+   PP VW
Sbjct: 451 EKSR-QKSKLFSSVSQRFGQQPPTVW 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,075
Number of Sequences: 5004
Number of extensions: 35809
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)