Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_E21
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical...    26   9.8  
AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin monoox...    26   9.8  
AF026209-3|AAK72080.3|  187|Caenorhabditis elegans Serpentine re...    26   9.8  

>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   NRPVSYPKHNQQT*PQHSYHRIRGTNYNRTISAL 107
           N  VS P +NQ   PQH  H  +  + N TIS++
Sbjct: 377 NSHVSRPNYNQ---PQHHQHHQQSHDQNSTISSV 407


>AL031633-22|CAB97238.1|  512|Caenorhabditis elegans Hypothetical
           protein Y39A1A.19 protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 199 VKARWQLGPPAVWRNHYGFCA-IVFM*RGP 285
           +KA W   P   WR ++G C   VF   GP
Sbjct: 454 MKALWMKNPLLAWRVYFGPCVPYVFRLNGP 483


>AJ582072-1|CAE46542.1|  512|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 512

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 199 VKARWQLGPPAVWRNHYGFCA-IVFM*RGP 285
           +KA W   P   WR ++G C   VF   GP
Sbjct: 454 MKALWMKNPLLAWRVYFGPCVPYVFRLNGP 483


>AF026209-3|AAK72080.3|  187|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform a protein.
          Length = 187

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 78  TNYNRTISALWFRHIAGGPGC 140
           T+Y+R    LWFR  +  P C
Sbjct: 4   TSYDRRALVLWFRRCSEAPNC 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,064,134
Number of Sequences: 27780
Number of extensions: 203179
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)