Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E17
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 27 2.4
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 27 2.4
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 3.2
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 3.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.2
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 26 4.2
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 26 4.2
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 5.6
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 5.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 5.6
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 25 5.6
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.6
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 25 7.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.3
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 9.7
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.7
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 401 LMVITKNIWNFLKVNTVNYSNMLTRSVF 484
+M T I N KVN VN N+L+ VF
Sbjct: 170 MMQATTQIQNLYKVNNVNPLNLLSAPVF 197
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 265 IAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDN 381
+ + +I KD G V KT +++ K+YLER DN
Sbjct: 690 LVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE-DN 727
>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 151 VVVLNMLEVKITEDVKVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKD 297
V+ L +L++ +TE V VG + +++A+ N IGI+ + KD
Sbjct: 99 VIRLGILKINLTEYVYVGQDTRKYLLADSKINATIRIGISLKQTSGNKD 147
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 455 YSNMLTRSVFYLLPLLWTWYLSIF 526
Y N+L + +FYLL LW L F
Sbjct: 999 YVNLLPKPLFYLLSRLWFGLLETF 1022
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 295 DAGASCVKFQKTCLKEKFTKKYLERSYDNHNS 390
D C K+ + C+ +F +K Y+N NS
Sbjct: 28 DVCFECQKYNENCVYRQFYRKIKRLKYNNDNS 59
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 313 VKFQKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFS-ESQYREL 456
+ Q L KF K + SYD N WG+ + + L F S+ R+L
Sbjct: 748 IDLQLPVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKDRKL 796
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 257 SP*WFCPTSAIIKHGLLPPTFTSSVI 180
SP + CP A++ G L P+ SSVI
Sbjct: 124 SPIYVCPNLAVMSIGFLLPSEDSSVI 149
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 322 QKTCLKEKFTKKYLERSYDNHNSWGKTYGDHKKHLEFSESQYRELFKYA 468
+K C E +TK++L S + N+ K KKHL+ E Q +L +YA
Sbjct: 371 EKVC--ESWTKQFLG-SLEKQNNEVK-----KKHLQLLEKQISKLMRYA 411
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 284 FISCFAIPISP*WFCPT 234
FI CF +PIS WF T
Sbjct: 420 FIGCFLLPISMFWFAWT 436
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 313 VKFQKTCLKEKFTKKYLER 369
V FQ LK+K+T++YLE+
Sbjct: 1127 VSFQFDLLKKKYTQEYLEK 1145
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 5.6
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +1
Query: 61 NLLLRSDSLFPSDPA*TGTRFSFVCFYGTLVVVLNM-LEVKITEDVKVGGNNPCFIIAEV 237
+LL + +L P +GTR S Y + N+ E K K+G + CF+
Sbjct: 437 DLLNANYTLLPLTTDKSGTRPSTTLQYELHKIGSNIKAEFKTMPIGKIGYQSTCFVRCST 496
Query: 238 GQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLE 366
GQ D+ A D + V F+ L FTK L+
Sbjct: 497 GQKTFSDLKTVLPTATLAADYISMIVLFR---LMANFTKISLQ 536
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 409 HHKFYPKNCDYHKSALNTF 353
H + YPKNC + +S L F
Sbjct: 235 HLREYPKNCAFSRSVLEIF 253
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 131 TNENRVPVQAGSLGNKLSLRNNRFIDLP 48
+N + + V + SL ++LSLRNN I +P
Sbjct: 52 SNNSNLAVTSRSLRHRLSLRNNTPIFMP 79
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -3
Query: 200 TFTSSVILTSSIFKTTTSVP*KQTNENRVPVQAGSLGNKLS 78
+F SS++LT+S ++TSV ++++ A S+G +S
Sbjct: 478 SFGSSLVLTASASPSSTSVDGSSSSDSSEASGAASVGVSIS 518
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.3
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 278 SCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTSVP*KQTNENRVPVQAG 99
S + PI+P PTS +PPT TSS S+ TT++ T +P G
Sbjct: 128 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTST---SCTTSTSIPPTGG 183
Query: 98 S 96
S
Sbjct: 184 S 184
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 278 SCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTS 147
S + PI+P PTS +PPT TSS SS TT++
Sbjct: 185 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 278 SCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTS 147
S + PI+P PTS +PPT TSS SS TT++
Sbjct: 241 SSLSTPITP-TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 283
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 383 TILGVKLMVITKNIWNFLKVNTVNYSN 463
+I +K V + +IWNF+K T + N
Sbjct: 568 SIRAIKYCVSSSSIWNFIKPYTEFWDN 594
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +2
Query: 452 NYSNMLTRSVFYLLPLLW 505
N+ LT++ +Y++PL+W
Sbjct: 148 NFLEPLTKTPWYMIPLIW 165
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -3
Query: 236 TSAIIKHGLLPPTFTSSVILTSSIFKTTTS 147
TSA+ + LLPPTF ++I +SS ++T +
Sbjct: 122 TSALTEITLLPPTF-HNLIPSSSSYETAVA 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,176
Number of Sequences: 5004
Number of extensions: 47546
Number of successful extensions: 127
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -