Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_E17
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937 30 1.1
05_01_0187 + 1349725-1352238 30 1.1
10_08_0808 + 20722479-20722585,20722674-20722959 30 1.4
05_06_0094 + 25477367-25477398,25477516-25477891,25478292-254783... 30 1.4
07_01_0747 - 5724586-5724648,5725229-5725309,5725564-5725656,572... 29 2.4
11_01_0763 + 6402901-6403971,6404581-6404826 28 4.3
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 27 9.9
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388... 27 9.9
08_02_1597 + 28128956-28129095,28129115-28129562 27 9.9
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454... 27 9.9
07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149 27 9.9
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 9.9
>11_06_0114 - 20284840-20284844,20285280-20285402,20285504-20287937
Length = 853
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 157 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 50
P R F K + +++ RL +N HY GLST+
Sbjct: 538 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 573
>05_01_0187 + 1349725-1352238
Length = 837
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 157 PQRAFHKNKQTKTGSPFRLDRLEINCHYAIIGLSTS 50
P R F K + +++ RL +N HY GLST+
Sbjct: 501 PTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTA 536
>10_08_0808 + 20722479-20722585,20722674-20722959
Length = 130
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 168 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR 254
AR +GGR WR++ V + R +W + +R
Sbjct: 95 ARGAADGGRPDWRERRVRWRRSAWRREAR 123
>05_06_0094 +
25477367-25477398,25477516-25477891,25478292-25478315,
25479069-25481828
Length = 1063
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -3
Query: 320 NLTQLAPASLAAFISCFAIPISP*WFCPTSAIIKHGLLPPTFTSSVILTSSIFKTTTSVP 141
N+TQ P S +F+S +A+ SP PT L PP+ TSS + +S + SVP
Sbjct: 824 NVTQRTPIS--SFLSGYAVQSSPGLTTPTKFTSLRPL-PPSVTSSHVYSSEDAQPHGSVP 880
>07_01_0747 -
5724586-5724648,5725229-5725309,5725564-5725656,
5725775-5725929,5726023-5726131,5726291-5726481,
5727463-5727614,5728453-5728728,5729415-5729587,
5730023-5730298,5730839-5730958,5731051-5731176,
5731629-5731970
Length = 718
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 92 QAIQPERGPGFRLFVFMERSLW 157
QA+ PER PGF L V SLW
Sbjct: 559 QAVFPERTPGFVLDVLARSSLW 580
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 168 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR*YW 263
AR +GGR WR++ V + R +W + +W
Sbjct: 242 ARGAADGGRPDWRERRVRWRRPAWRERRGRWW 273
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 183 NGGRKSWRQQSVFYNRGSWTKPSR*YW 263
+GGR WR++ V + R +W + +W
Sbjct: 236 DGGRPDWRERPVRWRRPAWRERRGRWW 262
>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
3881287-3883916
Length = 1163
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 168 ARS*DNGGRKSWRQQSVFYNRGSWTK 245
AR +GGR WR++ V + R +W +
Sbjct: 1128 ARGAADGGRPDWRERRVRWRRPAWRR 1153
>08_02_1597 + 28128956-28129095,28129115-28129562
Length = 195
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 168 ARS*DNGGRKSWRQQSVFYNRGSWTKPSR*YW 263
AR +GGR WR++ V + R +W + W
Sbjct: 120 ARGAADGGRPDWRERRVRWRRPAWRERRGRQW 151
>08_02_0812 -
21444112-21444273,21444374-21444488,21445369-21445487,
21446589-21446757,21447082-21447233,21447349-21447492,
21447575-21447687,21448265-21448316,21448408-21448494
Length = 370
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 425 WNFLKVNTVNYSN---MLTRSVFYLLPLLWTW 511
W + ++ +Y+ +++++ +YLLPL W W
Sbjct: 94 WTSVLISVTSYALGIFLISKAPWYLLPLAWAW 125
>07_03_1707 + 28866054-28866065,28866185-28866269,28866398-28867149
Length = 282
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 256 DIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKYLERSYDNHNS 390
D +A +IKA + C K QK K K +K + Y+N N+
Sbjct: 3 DKQMASLIIKANLECEKCCKKIQKVLNKLKDKEKIINIVYENSNN 47
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = +1
Query: 181 ITEDVKVGGNNPCFIIAEVGQNHQGDIGIAKQLIKAAKDAGASCVKFQKTCLKEKFTKKY 360
+ +VK ++AE+ + H+ + +L+KA S + ++
Sbjct: 1891 LQNEVKKSKQATELLLAELNEVHERADNLQDELVKAEAALSESFKQNSVVESARADAVRH 1950
Query: 361 LERSYDNHNSWGKTYGDHKKHLEFSESQYRELF 459
LER + + DH L + SQ RE+F
Sbjct: 1951 LERIMHMQSQTKRKQIDHLMELNSTSSQLREIF 1983
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,175,117
Number of Sequences: 37544
Number of extensions: 282686
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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